* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘raybevel’ ...
** package ‘raybevel’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMc9j9n/R.INSTALL1ab71557b9544b/raybevel/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c convert_ss_to_polygons_rcpp.cpp -o convert_ss_to_polygons_rcpp.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c generate_offset_links_nodes_rcpp.cpp -o generate_offset_links_nodes_rcpp.o
generate_offset_links_nodes_rcpp.cpp: In function ‘Rcpp::List generate_offset_links_nodes_rcpp(Rcpp::DataFrame, Rcpp::DataFrame, Rcpp::NumericVector, bool, bool)’:
generate_offset_links_nodes_rcpp.cpp:148:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<Node>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  148 |   for(int ii = 0; ii < nodes.size(); ii++) {
      |                   ~~~^~~~~~~~~~~~~~
generate_offset_links_nodes_rcpp.cpp:165:25: warning: comparison of integer expressions of different signedness: ‘size_t’ {aka ‘long unsigned int’} and ‘R_xlen_t’ {aka ‘long int’} [-Wsign-compare]
  165 |   for(size_t ii = 0; ii < offsets.size(); ++ii) {
      |                      ~~~^~~~~~~~~~~~~~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c math.cpp -o math.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/progress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -DCGAL_NO_GMP=1 -I../inst/include -fpic  -g -O2 -Wall -pedantic -mtune=native   -c rayskeleton.cpp -o rayskeleton.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/cstdfloat.hpp:27,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/float128_functions.hpp:15,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/fpclassify.hpp:13,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/default_ops.hpp:15,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/multiprecision/detail/generic_interconvert.hpp:12,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/multiprecision/number.hpp:12,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/boost_mp.h:42,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Number_types/internal/Exact_type_selector.h:27,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Exact_kernel_selector.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Filtered_kernel.h:22,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:21,
                 from rayskeleton.cpp:4:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:714:16: warning: non-standard suffix on floating constant [-Wpedantic]
  714 |                else if (x == BOOST_FLOAT128_C(0.0))
      |                ^~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/math/cstdfloat/cstdfloat_cmath.hpp:717:16: warning: non-standard suffix on floating constant [-Wpedantic]
  717 |                if (::BOOST_CSTDFLOAT_FLOAT128_FABS(x) < BOOST_CSTDFLOAT_FLOAT128_MIN)
      |                ^~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/aux_/na_assert.hpp:23,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/arg.hpp:25,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/placeholders.hpp:24,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/iterator/iterator_categories.hpp:16,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/iterator/iterator_adaptor.hpp:14,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/iterator/transform_iterator.hpp:13,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/boost/iterator/transform_iterator.hpp:27,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Coercion_traits.h:28,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/number_type_basic.h:35,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/basic.h:28,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Cartesian/Cartesian_base.h:20,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Simple_cartesian.h:20,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Exact_predicates_inexact_constructions_kernel.h:20:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: warning: unnecessary parentheses in declaration of ‘assert_arg’ [-Wparentheses]
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:194:21: note: remove parentheses
  194 | failed ************ (Pred::************
      |                     ^~~~~~~~~~~~~~~~~~~
      |                     -
  195 |       assert_arg( void (*)(Pred), typename assert_arg_pred<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  196 |     );
      |     ~                
      |     -
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: warning: unnecessary parentheses in declaration of ‘assert_not_arg’ [-Wparentheses]
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/mpl/assert.hpp:199:21: note: remove parentheses
  199 | failed ************ (boost::mpl::not_<Pred>::************
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                     -
  200 |       assert_not_arg( void (*)(Pred), typename assert_arg_pred_not<Pred>::type )
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  201 |     );
      |     ~                
      |     -
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:18,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/property_map/vector_property_map.hpp:14,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/property_map/property_map.hpp:598,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/graph/properties.hpp:19,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS.h:26,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/boost/graph/graph_traits_HalfedgeDS_default.h:15,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/HalfedgeDS_default.h:23,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Straight_skeleton_2.h:18,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/create_straight_skeleton_2.h:18,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/create_straight_skeleton_from_polygon_with_holes_2.h:17,
                 from rayskeleton.cpp:8:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/detail/shared_count.hpp:361:33: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  361 |     explicit shared_count( std::auto_ptr<Y> & r ): pi_( new sp_counted_impl_p<Y>( r.get() ) )
      |                                 ^~~~~~~~
In file included from /usr/include/c++/13/bits/std_thread.h:43,
                 from /usr/include/c++/13/thread:45,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/config.h:425,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/basic.h:21:
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:251:65: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  251 | template< class T, class R > struct sp_enable_if_auto_ptr< std::auto_ptr< T >, R >
      |                                                                 ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:508:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  508 |     explicit shared_ptr( std::auto_ptr<Y> & r ): px(r.get()), pn()
      |                               ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:521:22: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  521 |     shared_ptr( std::auto_ptr<Y> && r ): px(r.get()), pn()
      |                      ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:604:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  604 |     shared_ptr & operator=( std::auto_ptr<Y> & r )
      |                                  ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:613:34: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  613 |     shared_ptr & operator=( std::auto_ptr<Y> && r )
      |                                  ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp: In member function ‘boost::shared_ptr<T>& boost::shared_ptr<T>::operator=(std::auto_ptr<_Up>&&)’:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/shared_ptr.hpp:615:38: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
  615 |         this_type( static_cast< std::auto_ptr<Y> && >( r ) ).swap( *this );
      |                                      ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/Straight_skeleton_builder_2.h:27,
                 from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppCGAL/include/CGAL/create_straight_skeleton_2.h:19:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp: At global scope:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: ‘template<class> class std::auto_ptr’ is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
   75 |     explicit scoped_ptr( std::auto_ptr<T> p ) BOOST_SP_NOEXCEPT : px( p.release() )
      |                               ^~~~~~~~
/usr/include/c++/13/bits/unique_ptr.h:65:28: note: declared here
   65 |   template<typename> class auto_ptr;
      |                            ^~~~~~~~
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o raybevel.so RcppExports.o convert_ss_to_polygons_rcpp.o generate_offset_links_nodes_rcpp.o math.o rayskeleton.o -latomic -lpthread -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMc9j9n/R.INSTALL1ab71557b9544b/raybevel/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpMc9j9n/R.INSTALL1ab71557b9544b/raybevel/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpMc9j9n/R.INSTALL1ab71557b9544b/raybevel/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-raybevel/00new/raybevel/libs
** R
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (raybevel)