Install log for 'rEDM'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘rEDM’ ...
** package ‘rEDM’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpEGmMNN/R.INSTALL3e6f4300cb2d1/rEDM/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c CCM.cpp -o CCM.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from CCM.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c ComputeError.cpp -o ComputeError.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from ComputeError.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c DataFrame.cpp -o DataFrame.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from DataFrame.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c Embed.cpp -o Embed.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from Embed.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c EmbedDim.cpp -o EmbedDim.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from EmbedDim.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c Multiview.cpp -o Multiview.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from Multiview.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c ParameterList.cpp -o ParameterList.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from ParameterList.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c PredictInterval.cpp -o PredictInterval.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from PredictInterval.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c PredictNL.cpp -o PredictNL.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from PredictNL.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c RcppEDMCommon.cpp -o RcppEDMCommon.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from RcppEDMCommon.cpp:14:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c SMap.cpp -o SMap.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from SMap.cpp:1:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I ./cppEDM/src/ -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c Simplex.cpp -o Simplex.o
In file included from /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread.h:9,
                 from RcppEDMCommon.h:12,
                 from Simplex.cpp:2:
/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppThread/include/RcppThread/RMonitor.hpp:10:9: warning: "R_NO_REMAP" redefined
   10 | #define R_NO_REMAP
      |         ^~~~~~~~~~
<command-line>: note: this is the location of the previous definition
make[2]: Entering directory '/tmp/RtmpEGmMNN/R.INSTALL3e6f4300cb2d1/rEDM/src/cppEDM/src'
rm -f API.o CCM.o Common.o DateTime.o EDM.o EDM_Formatting.o EDM_Neighbors.o Eval.o Multiview.o Parameter.o Simplex.o SMap.o libEDM.a
make[2]: Leaving directory '/tmp/RtmpEGmMNN/R.INSTALL3e6f4300cb2d1/rEDM/src/cppEDM/src'
make[2]: Entering directory '/tmp/RtmpEGmMNN/R.INSTALL3e6f4300cb2d1/rEDM/src/cppEDM/src'
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c API.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c CCM.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Common.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c DateTime.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c EDM.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c EDM_Formatting.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c EDM_Neighbors.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Eval.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Multiview.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Parameter.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c Simplex.cc
g++-14 -std=gnu++17 -g -O2 -Wall -pedantic -mtune=native  -fpic -DCCM_THREADED -DUSING_R -c SMap.cc
ar -rcs libEDM.a API.o CCM.o Common.o DateTime.o EDM.o EDM_Formatting.o EDM_Neighbors.o Eval.o Multiview.o Parameter.o Simplex.o SMap.o # AR passed from Makevars
cp libEDM.a ../lib/
make[2]: Leaving directory '/tmp/RtmpEGmMNN/R.INSTALL3e6f4300cb2d1/rEDM/src/cppEDM/src'
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o rEDM.so CCM.o ComputeError.o DataFrame.o Embed.o EmbedDim.o Multiview.o ParameterList.o PredictInterval.o PredictNL.o RcppEDMCommon.o RcppExports.o SMap.o Simplex.o -L ./cppEDM/lib/ -lEDM -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpEGmMNN/R.INSTALL3e6f4300cb2d1/rEDM/src'
make[1]: Entering directory '/tmp/RtmpEGmMNN/R.INSTALL3e6f4300cb2d1/rEDM/src'
make[1]: Leaving directory '/tmp/RtmpEGmMNN/R.INSTALL3e6f4300cb2d1/rEDM/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-rEDM/00new/rEDM/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rEDM)