- using R Under development (unstable) (2024-08-16 r87026)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-1) 14.2.0
GNU Fortran (Debian 14.2.0-1) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘pcalg/DESCRIPTION’ ... OK
- this is package ‘pcalg’ version ‘2.7-11’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘pcalg’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.2.0-1) 14.2.0’
- used C++ compiler: ‘g++-14 (Debian 14.2.0-1) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/1s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [28s/35s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
LINGAM.Rd: fastICA
amatType.Rd: graph-class
corGraph.Rd: graph-class
dag2essgraph.Rd: graphNEL-class
getGraph.Rd: graph-class, graphAM-class
opt.target.Rd: graphNEL-class
pcAlgo-class.Rd: graph-class
randDAG.Rd: igraph
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [1s/1s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in shell scripts ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking line endings in Makefiles ... OK
- checking compilation flags in Makevars ... OK
- checking for GNU extensions in Makefiles ... OK
- checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
- checking use of PKG_*FLAGS in Makefiles ... OK
- checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [20s/26s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [100s/128s] OK
Running ‘test_LINGAM.R’ [2s/3s]
Running ‘test_addBgKnowledge.R’ [2s/2s]
Running ‘test_adjustment.R’ [3s/4s]
Running ‘test_ages.R’ [2s/2s]
Running ‘test_amat2dag.R’ [1s/2s]
Running ‘test_arges.R’ [1s/2s]
Running ‘test_backdoor.R’ [5s/6s]
Comparing ‘test_backdoor.Rout’ to ‘test_backdoor.Rout.save’ ... OK
Running ‘test_bicscore.R’ [2s/2s]
Running ‘test_causalEffect.R’ [1s/1s]
Running ‘test_coercion.R’ [2s/2s]
Running ‘test_compareGraphs.R’ [1s/2s]
Running ‘test_dag2cpdag.R’ [1s/2s]
Running ‘test_dag2essgraph.R’ [2s/2s]
Running ‘test_displayAmat.R’ [1s/2s]
Running ‘test_dsep.R’ [2s/2s]
Running ‘test_dsepAM.R’ [1s/1s]
Running ‘test_dsepAMTest.R’ [2s/2s]
Running ‘test_fci.R’ [1s/2s]
Running ‘test_fciPlus.R’ [2s/2s]
Running ‘test_gSquareBin.R’ [1s/2s]
Running ‘test_gSquareDis.R’ [2s/3s]
Running ‘test_gac.R’ [2s/4s]
Running ‘test_getNextSet.R’ [1s/2s]
Running ‘test_gies.R’ [3s/4s]
Running ‘test_ida.R’ [6s/8s]
Running ‘test_idaFast.R’ [4s/6s]
Running ‘test_isValidGraph.R’ [3s/3s]
Running ‘test_jointIda.R’ [2s/2s]
Running ‘test_mat2targets.R’ [2s/2s]
Running ‘test_optAdjSet.R’ [2s/3s]
Running ‘test_opttarget.R’ [1s/1s]
Running ‘test_pag2anc.R’ [1s/2s]
Running ‘test_pag2conf.R’ [1s/2s]
Running ‘test_pag2edge.R’ [1s/2s]
Running ‘test_pc.R’ [2s/3s]
Running ‘test_pcSelect.R’ [3s/3s]
Running ‘test_pcalg2dagitty.R’ [2s/2s]
Running ‘test_pcorOrder.R’ [1s/2s]
Running ‘test_pdag2allDags.R’ [1s/1s]
Running ‘test_pdag2dag.R’ [1s/2s]
Running ‘test_possDeAn.R’ [2s/2s]
Running ‘test_randDAG.R’ [4s/5s]
Comparing ‘test_randDAG.Rout’ to ‘test_randDAG.Rout.save’ ...1a2,16
> R version 4.3.1 (2023-06-16) -- "Beagle Scouts"
> Copyright (C) 2023 The R Foundation for Statistical Computing
> Platform: x86_64-pc-linux-gnu (64-bit)
>
> R ist freie Software und kommt OHNE JEGLICHE GARANTIE.
> Sie sind eingeladen, es unter bestimmten Bedingungen weiter zu verbreiten.
> Tippen Sie 'license()' or 'licence()' für Details dazu.
>
> R ist ein Gemeinschaftsprojekt mit vielen Beitragenden.
> Tippen Sie 'contributors()' für mehr Information und 'citation()',
> um zu erfahren, wie R oder R packages in Publikationen zitiert werden können.
>
> Tippen Sie 'demo()' für einige Demos, 'help()' für on-line Hilfe, oder
> 'help.start()' für eine HTML Browserschnittstelle zur Hilfe.
> Tippen Sie 'q()', um R zu verlassen.
56c71
< Number of Edges = 21
---
> Number of Edges = 0
61c76
< Number of Edges = 13
---
> Number of Edges = 12
66c81
< Number of Edges = 16
---
> Number of Edges = 13
71c86
< Number of Edges = 19
---
> Number of Edges = 16
90,93c105,108
< $ barabasi : chr "4"
< $ geometric: chr [1:3] "3" "4" "7"
< $ power : chr [1:4] "2" "7" "8" "9"
< $ interEr : chr [1:2] "3" "7"
---
> $ barabasi : chr [1:10] "1" "2" "3" "4" ...
> $ geometric: chr [1:3] "2" "6" "10"
> $ power : chr [1:4] "2" "4" "5" "10"
> $ interEr : chr [1:2] "5" "6"
108,111c123,126
< $ barabasi : chr [1:3] "1" "6" "7"
< $ geometric: chr [1:3] "5" "6" "9"
< $ power : chr [1:3] "4" "5" "10"
< $ interEr : chr [1:2] "2" "4"
---
> $ barabasi : chr [1:10] "1" "2" "3" "4" ...
> $ geometric: chr [1:4] "1" "3" "5" "10"
> $ power : chr [1:4] "1" "6" "7" "8"
> $ interEr : chr [1:3] "1" "3" "8"
145c160
< Number of Edges = 13
---
> Number of Edges = 0
150c165
< Number of Edges = 6
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> Number of Edges = 12
155c170
< Number of Edges = 11
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> Number of Edges = 13
160c175
< Number of Edges = 10
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> Number of Edges = 11
174a190
> Lade nötiges Paket: Matrix
240,242c256,258
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425,431c441,447
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523,525c539,541
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527,532c543,548
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538,547c554,563
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555,562c571,578
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568,577c584,593
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652,655c668,671
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658,662c674,678
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669,670c685,686
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672c688
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674c690
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676,677c692,693
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693,697c709,713
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703,705c719,721
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708,714c724,730
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Running ‘test_randomDAG.R’ [1s/2s]
Running ‘test_rfci.R’ [3s/4s]
Running ‘test_rmvDAG.R’ [1s/2s]
Running ‘test_searchAM.R’ [1s/2s]
Running ‘test_shd.R’ [1s/2s]
Running ‘test_skeleton.R’ [3s/3s]
Running ‘test_udag2pag.R’ [1s/2s]
Running ‘test_udag2pdag.R’ [4s/5s]
Running ‘test_wgtMatrix.R’ [1s/1s]
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [25s/32s] OK
- checking PDF version of manual ... [9s/12s] OK
- checking HTML version of manual ... [5s/8s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 NOTE