- using R Under development (unstable) (2024-11-14 r87333)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-8) 14.2.0
GNU Fortran (Debian 14.2.0-8) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘move/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘move’ version ‘4.2.5’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘move’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
- used C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [6s/10s] OK
- checking whether the package can be loaded with stated dependencies ... [6s/10s] OK
- checking whether the package can be unloaded cleanly ... [6s/9s] OK
- checking whether the namespace can be loaded with stated dependencies ... [6s/9s] OK
- checking whether the namespace can be unloaded cleanly ... [6s/9s] OK
- checking loading without being on the library search path ... [6s/7s] OK
- checking whether startup messages can be suppressed ... [6s/9s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [30s/42s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [6s/8s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [22s/31s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [45s/63s] ERROR
Running ‘test-all.R’ [45s/62s]
Running the tests in ‘tests/test-all.R’ failed.
Complete output:
> library(testthat)
> test_check("move")
Loading required package: move
Loading required package: geosphere
Loading required package: sp
Loading required package: raster
List of 2
$ Leroy : num [1:918] 101.4 157.4 26.5 -133.2 -108.4 ...
$ Ricky.T: num [1:999] 115.7 70.2 -18.2 -78.9 76.5 ...
List of 2
$ Leroy : num [1:918] 6.38 5.61 12.67 9.65 11.73 ...
$ Ricky.T: num [1:999] 153.35 12.62 7.81 10.23 13.18 ...
List of 2
$ Leroy : Named num [1:919] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:919] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
$ Ricky.T: Named num [1:1000] NA NA NA NA NA NA NA NA NA NA ...
..- attr(*, "names")= chr [1:1000] "Ricky.T1" "Ricky.T2" "Ricky.T3" "Ricky.T4" ...
class : Move
features : 919
extent : -73.93067, -73.84366, 42.70898, 42.7687 (xmin, xmax, ymin, ymax)
crs : +proj=longlat +datum=WGS84 +no_defs
variables : 17
names : timestamp, eobs.battery.voltage, eobs.horizontal.accuracy.estimate, eobs.key.bin.checksum, eobs.speed.accuracy.estimate, eobs.start.timestamp, eobs.status, eobs.temperature, eobs.type.of.fix, eobs.used.time.to.get.fix, ground.speed, heading, height.above.ellipsoid, utm.easting, utm.northing, ...
min values : 1234354605, 3596, 3.07, 3258904, 0.27, 2009-02-11 12:14:59.000, A, 13, 3, 4, 0.01, 0, -169.6, 587507.837877134, 4729143.16566605, ...
max values : 1236158219.998, 3666, 97.02, 4291715164, 33.04, 2009-03-04 09:15:01.000, A, 35, 3, 119, 31.71, 359.79, 349, 594679.382402579, 4735720.47868847, ...
timestamps : 2009-02-11 12:16:45 ... 2009-03-04 09:16:59.998 Time difference of 21 days (start ... end, duration)
sensors : gps
indiv. data : eobs.fix.battery.voltage, manually.marked.outlier, visible, sensor.type, individual.taxon.canonical.name, tag.local.identifier, individual.local.identifier, study.name, study.timezone
indiv. value: 0 NA true gps Martes pennanti 74 Leroy Urban fisher GPS tracking Eastern Standard Time
unused rec. : 1071
study name : Urban fisher GPS tracking
date created: 2023-01-20 16:56:43
class : DBBMM
dimensions : 42, 45, 1890 (nrow, ncol, ncell)
resolution : 759.9677, 759.9677 (x, y)
extent : -17098.3, 17100.24, -15958.9, 15959.75 (xmin, xmax, ymin, ymax)
crs : +proj=aeqd +lat_0=42.73884025 +lon_0=-73.8871629 +x_0=0 +y_0=0 +datum=WGS84 +units=m +no_defs
source : memory
names : layer
values : 0, 0.06319155 (min, max)
List of 2
$ Leroy : num [1:918] 0.00715 0.00659 0.01461 0.01069 0.01313 ...
$ Ricky.T: num [1:999] 0.0928 0.0825 0.0691 0.0769 0.3766 ...
List of 2
$ Leroy : num [1:918] 14.9 14.2 14.5 15 14.9 ...
$ Ricky.T: num [1:999] 27.55 2.55 1.883 2.217 0.583 ...
List of 2
$ Leroy : POSIXct[1:919], format: "2009-02-11 12:16:45" "2009-02-11 12:31:38" ...
$ Ricky.T: POSIXct[1:1000], format: "2010-02-09 17:01:23" "2010-02-09 17:28:56" ...
List of 2
$ Leroy : num [1:917] 56 -130.9 -159.7 24.8 -179.2 ...
$ Ricky.T: num [1:998] -45.5 -88.4 -60.7 155.4 -108.9 ...
Formal class '.unUsedRecords' [package "move"] with 3 slots
..@ timestampsUnUsedRecords: POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 1071 obs. of 19 variables:
.. ..$ timestamp : POSIXct[1:1071], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:1071] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:1071] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 1990 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:1071] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:1071] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:1071] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:1071] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:1071], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
Formal class '.unUsedRecordsStack' [package "move"] with 4 slots
..@ trackIdUnUsedRecords : Factor w/ 2 levels "Leroy","Ricky.T": 1 1 1 1 1 1 1 1 1 1 ...
.. ..- attr(*, "names")= chr [1:2959] "Leroy1" "Leroy2" "Leroy3" "Leroy4" ...
..@ timestampsUnUsedRecords: POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
..@ sensorUnUsedRecords : Factor w/ 1 level "gps": 1 1 1 1 1 1 1 1 1 1 ...
..@ dataUnUsedRecords :'data.frame': 2959 obs. of 22 variables:
.. ..$ timestamp : POSIXct[1:2959], format: "2009-02-11 00:00:01" "2009-02-11 00:15:01" ...
.. ..$ location.long : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ location.lat : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.battery.voltage : int [1:2959] 3642 3635 3632 3632 3642 3643 3647 3652 3654 3654 ...
.. ..$ eobs.horizontal.accuracy.estimate: num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.key.bin.checksum : num [1:2959] 3.72e+09 3.76e+09 3.05e+07 7.20e+08 2.24e+09 ...
.. ..$ eobs.speed.accuracy.estimate : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.start.timestamp : Factor w/ 12836 levels "2009-02-11 00:00:01.000",..: 1 2 3 4 5 6 7 8 9 10 ...
.. ..$ eobs.status : Factor w/ 2 levels "A","D": 2 2 2 2 2 2 2 2 2 2 ...
.. ..$ eobs.temperature : int [1:2959] 27 23 21 20 22 22 21 20 26 29 ...
.. ..$ eobs.type.of.fix : int [1:2959] 0 0 0 0 0 0 0 0 0 0 ...
.. ..$ eobs.used.time.to.get.fix : int [1:2959] 120 120 120 120 120 120 120 120 120 120 ...
.. ..$ ground.speed : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ heading : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ height.above.ellipsoid : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.easting : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.northing : num [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ utm.zone : Factor w/ 2 levels "","18N": 1 1 1 1 1 1 1 1 1 1 ...
.. ..$ study.local.timestamp : POSIXct[1:2959], format: "2009-02-10 19:00:01" "2009-02-10 19:15:01" ...
.. ..$ X : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ event.id : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
.. ..$ eobs.fix.battery.voltage : int [1:2959] NA NA NA NA NA NA NA NA NA NA ...
... computing starting delimiters
[1] 0 -0.0000e+00 4 919
[1] 1 -1.5574e+00 4 674
[1] 2 -1.3639e+00 4 66
[1] 3 -1.0174e+00 4 45
[1] 4 -8.4560e-01 4 23
[1] 5 -7.7790e-01 4 13
[1] 6 -7.5598e-01 4 10
[1] 7 -7.4796e-01 4 8
[1] 8 -7.4349e-01 4 13
[1] 9 -7.3983e-01 4 11
[1] 10 -7.3618e-01 4 7
[1] 11 -7.3268e-01 4 16
[1] 12 -7.2911e-01 4 6
[1] 13 -7.2514e-01 4 9
[1] 14 -7.2179e-01 4 9
[1] 15 -7.1882e-01 4 9
[1] 16 -7.1578e-01 4 5
[1] 17 -7.1345e-01 4 5
[1] 18 -7.1146e-01 4 1
[1] 19 -7.1022e-01 4 5
[1] 20 -7.0936e-01 4 4
[1] 21 -7.0868e-01 4 5
[1] 22 -7.0826e-01 4 1
[1] 23 -7.0798e-01 4 3
[1] 24 -7.0791e-01 4 1
[1] 25 -7.0772e-01 4 1
[1] 26 -7.0767e-01 4 2
[1] 27 -7.0760e-01 4 0
[1] 28 -7.0758e-01 4 0
[1] 29 -7.0757e-01 4 0
[1] ... Stable clustering
username:
password:
username:
password:
[ FAIL 1 | WARN 12 | SKIP 22 | PASS 411 ]
══ Skipped tests (22) ══════════════════════════════════════════════════════════
• Function now defunct (2): 'test.getDataRepositoryData.R:3:3',
'test.getDataRepositoryData.R:79:3'
• On CRAN (18): 'test.brownian.bridge.dyn.R:4:3',
'test.brownian.bridge.dyn.R:22:3', 'test.brownian.bridge.dyn.R:45:3',
'test.brownian.bridge.dyn.R:101:3', 'test.brownian.bridge.dyn.R:125:3',
'test.brownian.bridge.dyn.R:186:3', 'test.brownian.bridge.dyn.R:235:3',
'test.brownian.bridge.dyn.R:294:3', 'test.dBGB.R:5:3', 'test.dBGB.R:13:3',
'test.dBGB.R:28:3', 'test.dBGB.R:48:3', 'test.dBGB.R:60:3',
'test.dBGB.R:87:3', 'test.dBGB.R:110:3', 'test.move.R:52:3',
'test.web.R:13:3', 'test.web.R:33:3'
• fails on old sp version (1): 'test.spTransform.R:10:3'
• provides a problem that needs solving (1): 'test.move.R:4:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test.getDuplicatedTimestamps.R:9:3'): basic functionality ─────────
getDuplicatedTimestamps(df) not equal to structure(...).
Names: 1 string mismatch
[ FAIL 1 | WARN 12 | SKIP 22 | PASS 411 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [43s/63s] OK
- checking PDF version of manual ... [6s/8s] OK
- checking HTML version of manual ... [3s/5s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR