- using R Under development (unstable) (2024-10-19 r87247)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-6) 14.2.0
GNU Fortran (Debian 14.2.0-6) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘medfateland/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘medfateland’ version ‘2.4.6’
- package encoding: UTF-8
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- checking package dependencies ... OK
- checking if this is a source package ... OK
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- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘medfateland’ can be installed ... OK
See the install log for details.
- used C++ compiler: ‘g++-14 (Debian 14.2.0-6) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [6s/7s] OK
- checking whether the package can be loaded with stated dependencies ... [5s/7s] OK
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- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [36s/49s] OK
- checking Rd files ... [1s/1s] OK
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- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
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- checking compiled code ... OK
- checking examples ... [11s/16s] ERROR
Running examples in ‘medfateland-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: spwb_land_day
> ### Title: One-day watershed simulations
> ### Aliases: spwb_land_day growth_land_day
>
> ### ** Examples
>
> # Load example watershed data after burnin period
> data("example_watershed_burnin")
>
> # Set request for daily model results in cells number 3, 6 (outlet) and 9
> example_watershed_burnin$result_cell <- FALSE
> example_watershed_burnin$result_cell[c(3,6,9)] <- TRUE
>
> # Get bounding box to determine limits
> b <- sf::st_bbox(example_watershed_burnin)
> b
xmin ymin xmax ymax
401430 4671870 402830 4672570
>
> # Define a raster topology, using terra package,
> # with the same CRS as the watershed. In this example cells have 100 m side.
> # Coordinates in the 'sf' object are assumed to be cell centers
> r <-terra::rast(xmin = 401380, ymin = 4671820, xmax = 402880, ymax = 4672620,
+ nrow = 8, ncol = 15, crs = "epsg:32631")
>
> # Load example meteo data frame from package meteoland
> data("examplemeteo")
>
> # Load default medfate parameters
> data("SpParamsMED")
>
> # Watershed control parameters (TETIS model; Frances et al. 2007)
> ws_control <- default_watershed_control("tetis")
>
> # Launch simulation
> date <- "2001-03-01"
> sf_out <- spwb_land_day(r, example_watershed_burnin, SpParamsMED, examplemeteo,
+ date = date,
+ watershed_control = ws_control)
── Simulation of model 'spwb' over a watershed for day '2001-03-01' ────────────
ℹ Checking topology
✔ Checking topology [21ms]
ℹ Checking 'sf' data
✔ Checking 'sf' data [55ms]
ℹ Determining neighbors and discharge for TETIS
✔ Determining neighbors and discharge for TETIS [50ms]
• Hydrological model: TETIS
• Number of grid cells: 120 Number of target cells: 66
• Average cell area: 10006 m2, Total area: 120 ha, Target area: 66 ha
• Cell land use wildland: 48 agriculture: 17 artificial: 0 rock: 1 water: 0
• Cells with soil: 65
• Number of cells with daily model results requested: 3
• Number of outlet cells: 1
ℹ Building spwb input
✔ Building spwb input [24ms]
ℹ 0 cells needed initialization
Package 'meteoland' [ver. 2.2.2]
Error in medfate::spwb_day(xi$x, date, xi$meteovec, latitude = xi$latitude, :
Index out of bounds: [index='internalCommunication'].
Calls: spwb_land_day ... .watershedDayTetis -> .f_landunit_day -> <Anonymous>
✖ 0 cells needed initialization [114ms]
Execution halted
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Running ‘testthat.R’ [61s/81s]
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- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR