Install log for 'lidR'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘lidR’ ...
** package ‘lidR’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-13 (Debian 13.3.0-1) 13.3.0’
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSXPUKH/R.INSTALL4e0d21a393045/lidR/src'
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c C_Gatziolis2019.cpp -o C_Gatziolis2019.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c C_chm_prep.cpp -o C_chm_prep.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c C_dalponte2016.cpp -o C_dalponte2016.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c C_delaunay.cpp -o C_delaunay.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c LAS.cpp -o LAS.o
LAS.cpp: In member function ‘void LAS::filter_local_maxima(Rcpp::NumericVector, double, bool)’:
LAS.cpp:387:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  387 |   for (int i = 0 ; i < npoints ; i++) { if (Z[i] < min_height) state[i] = NLM; }
      |                    ~~^~~~~~~~~
LAS.cpp:375:8: warning: unused variable ‘UKN’ [-Wunused-variable]
  375 |   char UKN = 0;
      |        ^~~
LAS.cpp:377:8: warning: unused variable ‘LMX’ [-Wunused-variable]
  377 |   char LMX = 2;
      |        ^~~
LAS.cpp: In member function ‘void LAS::filter_local_maxima(Rcpp::NumericVector)’:
LAS.cpp:463:10: warning: variable ‘orientation’ set but not used [-Wunused-but-set-variable]
  463 |   double orientation = 0;
      |          ^~~~~~~~~~~
LAS.cpp: In member function ‘SEXPREC* LAS::find_polygon_ids(Rcpp::List, bool)’:
LAS.cpp:621:10: warning: unused variable ‘is_in_polygon’ [-Wunused-variable]
  621 |     bool is_in_polygon = false;
      |          ^~~~~~~~~~~~~
LAS.cpp: In member function ‘void LAS::filter_isolated_voxel(double, unsigned int)’:
LAS.cpp:784:10: warning: unused variable ‘zmax’ [-Wunused-variable]
  784 |   double zmax = max(Z);
      |          ^~~~
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c Progress.cpp -o Progress.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppExports.cpp -o RcppExports.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c RcppFunction.cpp -o RcppFunction.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c UnitTests.cpp -o UnitTests.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c altrep.cpp -o altrep.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c convaveman.cpp -o convaveman.o
g++-13 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -fopenmp -I../inst/include/ -DRCPP_NO_MODULES -fpic  -g -O2 -Wall -pedantic -mtune=native   -c openmputils.cpp -o openmputils.o
g++-13 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o lidR.so C_Gatziolis2019.o C_chm_prep.o C_dalponte2016.o C_delaunay.o LAS.o Progress.o RcppExports.o RcppFunction.o UnitTests.o altrep.o convaveman.o openmputils.o -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -fopenmp -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSXPUKH/R.INSTALL4e0d21a393045/lidR/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpSXPUKH/R.INSTALL4e0d21a393045/lidR/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpSXPUKH/R.INSTALL4e0d21a393045/lidR/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-lidR/00new/lidR/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (lidR)