- using R Under development (unstable) (2025-03-29 r88074)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-19) 14.2.0
GNU Fortran (Debian 14.2.0-19) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘lacunaritycovariance/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘lacunaritycovariance’ version ‘1.1-7’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘lacunaritycovariance’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s/14s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
contagdiscstate.Rd: Hest
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [13s/15s] OK
- checking for unstated dependencies in ‘demo’ ... OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [43s/50s] ERROR
Running ‘run_testthattests.R’ [43s/50s]
Running the tests in ‘tests/run_testthattests.R’ failed.
Complete output:
> library(testthat)
> #library(lacunaritycovariance)
> test_check("lacunaritycovariance")
Loading required package: lacunaritycovariance
Loading required package: spatstat
Loading required package: spatstat.data
Loading required package: spatstat.univar
spatstat.univar 3.1-2
Loading required package: spatstat.geom
spatstat.geom 3.3-6
Loading required package: spatstat.random
spatstat.random 3.3-3
Loading required package: spatstat.explore
Loading required package: nlme
spatstat.explore 3.4-2
Loading required package: spatstat.model
Loading required package: rpart
spatstat.model 3.3-5
Loading required package: spatstat.linnet
spatstat.linnet 3.2-5
spatstat 3.3-2
For an introduction to spatstat, type 'beginner'
[ FAIL 1 | WARN 0 | SKIP 14 | PASS 123 ]
══ Skipped tests (14) ══════════════════════════════════════════════════════════
• On CRAN (14): 'test-covar.R:30:3', 'test-gbl.R:67:3', 'test-gbl.R:136:3',
'test-gbl.R:160:3', 'test-gbl.R:166:3', 'test-gbl.R:190:3',
'test-innerprod.R:26:3', 'test-secondorderprops.R:8:3',
'test-secondorderprops.R:33:3', 'test-secondorderprops.R:70:3',
'test-secondorderprops.R:88:3', 'test-secondorderprops.R:96:3',
'test-secondorderprops.R:105:3', 'test-secondorderprops.R:121:3'
══ Failed tests ════════════════════════════════════════════════════════════════
── Failure ('test-rbpto.R:39:3'): rbpto generates simulations that match covariance for big window ──
mean(abs(cvc.diff)) is not strictly less than cp * cvcreltol * 1.5. Difference: 0.0683
[ FAIL 1 | WARN 0 | SKIP 14 | PASS 123 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [7s/8s] OK
- checking PDF version of manual ... [6s/7s] OK
- checking HTML version of manual ... [2s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR, 1 NOTE