Install log for 'jackalope'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘jackalope’ ...
** package ‘jackalope’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/tmp/RtmpSrwfom/R.INSTALL274cf67e85ca00/jackalope/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rhtslib/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zlibbioc/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rhtslib/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zlibbioc/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c alter_reference.cpp -o alter_reference.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rhtslib/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zlibbioc/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c create_sequences.cpp -o create_sequences.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rhtslib/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zlibbioc/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c hap_classes.cpp -o hap_classes.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rhtslib/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zlibbioc/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c haps_ssites.cpp -o haps_ssites.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rhtslib/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zlibbioc/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c hts_illumina.cpp -o hts_illumina.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -D_FILE_OFFSET_BITS=64 -I../inst/include/ -D_FILE_OFFSET_BITS=64 -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppProgress/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rhtslib/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/zlibbioc/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c hts_pacbio.cpp -o hts_pacbio.o
In file included from hts_pacbio.cpp:21:
hts_pacbio.h: In member function ‘double PacBioQualityError::trunc_norm(const double&, pcg64&)’:
hts_pacbio.h:349:27: error: ‘pnorm5’ is not a member of ‘R’; did you mean ‘rnorm’?
  349 |             double p = R::pnorm5(a_bar, 0, 1, 1, 0);
      |                           ^~~~~~
      |                           rnorm
hts_pacbio.h:352:27: error: ‘qnorm5’ is not a member of ‘R’; did you mean ‘rnorm’?
  352 |             double x = R::qnorm5(u, 0, 1, 1, 0);
      |                           ^~~~~~
      |                           rnorm
make[1]: *** [/home/hornik/tmp/R.check/r-devel-gcc/Work/build/etc/Makeconf:204: hts_pacbio.o] Error 1
make[1]: Leaving directory '/tmp/RtmpSrwfom/R.INSTALL274cf67e85ca00/jackalope/src'
ERROR: compilation failed for package ‘jackalope’
* removing ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/jackalope’