* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/huge.Rcheck’
* using R Under development (unstable) (2025-02-25 r87824)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘huge/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘huge’ version ‘1.3.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘huge’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/huge-00install.html' for details.
* used C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/3s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/13s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) huge.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is  \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
       |                                                                                                                                                                                                               ^
checkRd: (-1) huge.Rd:31: Lost braces; missing escapes or markup?
    31 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is  \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
       |                                                                                                                                                                                                                          ^
checkRd: (-1) huge.Rd:37: Lost braces; missing escapes or markup?
    37 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}
       |                                                                                                                                                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) huge.glasso.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is  \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
       |                                                                                                                                                                                                               ^
checkRd: (-1) huge.glasso.Rd:26: Lost braces; missing escapes or markup?
    26 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is  \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
       |                                                                                                                                                                                                                          ^
checkRd: (-1) huge.mb.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is  \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
       |                                                                                                                                                                                                               ^
checkRd: (-1) huge.mb.Rd:28: Lost braces; missing escapes or markup?
    28 | \item{scr}{If \code{scr = TRUE}, the lossy screening rule is applied to preselect the neighborhood before the graph estimation. The default value is  \code{FALSE}. NOT applicable when \code{method = "ct"}, {"mb"}, or {"tiger"}.}
       |                                                                                                                                                                                                                          ^
checkRd: (-1) huge.mb.Rd:34: Lost braces; missing escapes or markup?
    34 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}
       |                                                                                                                                                                                                                                                                                                                                                                                                                                        ^
checkRd: (-1) huge.tiger.Rd:25: Lost braces; missing escapes or markup?
    25 | \item{sym}{Symmetrize the output graphs. If \code{sym = "and"}, the edge between node \code{i} and node \code{j} is selected ONLY when both node \code{i} and node \code{j} are selected as neighbors for each other. If \code{sym = "or"}, the edge is selected when either node \code{i} or node \code{j} is selected as the neighbor for each other. The default value is \code{"or"}. ONLY applicable when \code{method = "mb"} or {"tiger"}.}
       |                                                                                                                                                                                                                                                                                                                                                                                                                                        ^
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in shell scripts ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking sizes of PDF files under ‘inst/doc’ ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [31s/39s] OK
Examples with CPU (user + system) or elapsed time > 5s
                user system elapsed
huge.generator 6.036  0.066   7.382
huge.inference 5.242  0.065   6.695
huge.select    4.164  0.051   5.439
huge.roc       3.592  0.007   5.426
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [11s/15s] OK
  Running ‘test.R’ [10s/14s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [3s/5s] OK
* checking PDF version of manual ... [5s/7s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 2 NOTEs