• using R Under development (unstable) (2025-02-28 r87840)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-16) 14.2.0     GNU Fortran (Debian 14.2.0-16) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘gimap/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘gimap’ version ‘1.0.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gimap’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/13s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/17s] ERROR Running examples in ‘gimap-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: setup_data > ### Title: Making a new gimap dataset > ### Aliases: setup_data > > ### ** Examples > > > counts <- get_example_data("count") %>% + dplyr::select(c( + "Day00_RepA", "Day05_RepA", "Day22_RepA", "Day22_RepB", + "Day22_RepC" + )) %>% + as.matrix() Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: 1.4 kB Downloading: PP_pgPEN_HeLa_counts.txt   |   | | 0%   |   |======================================================================| 100%   |   | | 0%   |   | | 1%   |   |= | 1%   |   |== | 3%   |   |=== | 4%   |   |=== | 5%   |   |==== | 6%   |   |======= | 10%   |   |========== | 14%   |   |========== | 15%   |   |=========== | 16%   |   |============ | 17%   |   |============ | 18%   |   |============= | 18%   |   |============== | 20%   |   |=============== | 21%   |   |=============== | 22%   |   |================ | 23%   |   |================= | 24%   |   |================== | 25%   |   |=================== | 26%   |   |=================== | 27%   |   |=================== | 28%   |   |==================== | 28%   |   |==================== | 29%   |   |====================== | 31%   |   |========================= | 35%   |   |=========================== | 39%   |   |============================== | 43%   |   |================================ | 46%   |   |=================================== | 50%   |   |===================================== | 54%   |   |======================================== | 57%   |   |========================================= | 59%   |   |============================================ | 62%   |   |============================================== | 66%   |   |================================================= | 70%   |   |==================================================== | 74%   |   |====================================================== | 77%   |   |======================================================= | 79%   |   |======================================================== | 80%   |   |======================================================== | 81%   |   |============================================================= | 87%   |   |================================================================== | 94%   |   |======================================================================| 100% Warning in file(con, "w") :   cannot open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/gimap/extdata/PP_pgPEN_HeLa_counts.txt': Read-only file system Error in file(con, "w") : cannot open the connection Calls: %>% ... get_example_data -> get_figshare -> writeLines -> file Execution halted Examples with CPU (user + system) or elapsed time > 5s        user system elapsed run_qc 3.89 0.222 6.991
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [2s/3s] OK   Running ‘testthat.R’ [2s/3s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [8s/12s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR