• using R Under development (unstable) (2024-12-19 r87451)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘gestate/DESCRIPTION’ ... OK
• this is package ‘gestate’ version ‘1.6.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘gestate’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [18s/24s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) analyse_sim.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) analyse_sim.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_KM.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_KM.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_KM.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_KM.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:89: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:91: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) event_prediction_prior.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_KM.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_KM.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_KM.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_KM.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_tte_data.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_tte_data.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_tte_data.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_tte_data.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_tte_data_prior.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_tte_data_prior.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_tte_data_prior.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) fit_tte_data_prior.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:53: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:82: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:83: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:85: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:86: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:90: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:91: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:92: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:93: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nph_traj.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plot_npht.Rd:54: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_npht.Rd:55: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_npht.Rd:56: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_npht.Rd:57: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_npht.Rd:58: Lost braces in \itemize; meant \describe ? checkRd: (-1) plot_npht.Rd:59: Lost braces in \itemize; meant \describe ? checkRd: (-1) simulate_trials.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:68: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:69: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simulate_trials_strata.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:24: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:26: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:28: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:29: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:30: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:31: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:32: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:33: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:34: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:35: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:36: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:37: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:39: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:40: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) summarise_analysis.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) survfit_fast.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) survfit_fast.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) survfit_fast.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) survfit_fast.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) survfit_fast.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) survfit_fast.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) survfit_fast.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/11s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [8s/10s] OK   Running ‘testthat.R’ [7s/10s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [33s/46s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE