* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘geocmeans’ ...
** package ‘geocmeans’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
using C++17
make[1]: Entering directory '/tmp/RtmpALY7by/R.INSTALLd5c427ab95a11/geocmeans/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c FCM_functions.cpp -o FCM_functions.o
FCM_functions.cpp: In function ‘Rcpp::NumericMatrix calcBelongMatrixNoisy(Rcpp::NumericMatrix, Rcpp::NumericMatrix, double, double, Rcpp::NumericVector)’:
FCM_functions.cpp:211:9: warning: unused variable ‘k’ [-Wunused-variable]
211 | int i,k,j;
| ^
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c GFCM_functions.cpp -o GFCM_functions.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c focal_cpp.cpp -o focal_cpp.o
focal_cpp.cpp: In function ‘Rcpp::NumericMatrix focal_euclidean_arr_window(arma::cube, arma::mat)’:
focal_cpp.cpp:205:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
205 | for(i = 0; i < subcube.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~
focal_cpp.cpp:206:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
206 | for(j = 0; j < subcube.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~
focal_cpp.cpp: In function ‘arma::cube focal_adj_mean_arr_window(arma::cube, arma::mat)’:
focal_cpp.cpp:287:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
287 | for(i = 0; i < subcube.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~
focal_cpp.cpp:288:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
288 | for(j = 0; j < subcube.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~
focal_cpp.cpp:303:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
303 | for(i = 0; i < subcube.n_slices; i++){
| ~~^~~~~~~~~~~~~~~~~~
focal_cpp.cpp:307:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
307 | for(i = 0; i < mat.n_slices; i++){
| ~~^~~~~~~~~~~~~~
focal_cpp.cpp:244:10: warning: unused variable ‘distsums’ [-Wunused-variable]
244 | double distsums;
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c jaccard_idx.cpp -o jaccard_idx.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c moran_for_rasters.cpp -o moran_for_rasters.o
moran_for_rasters.cpp: In function ‘double moranI_matrix_window(Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
moran_for_rasters.cpp:83:9: warning: unused variable ‘weight’ [-Wunused-variable]
83 | float weight = 1.0;
| ^~~~~~
moran_for_rasters.cpp: In function ‘Rcpp::NumericVector local_moranI_matrix_window(Rcpp::NumericMatrix, Rcpp::NumericMatrix)’:
moran_for_rasters.cpp:164:9: warning: unused variable ‘weight’ [-Wunused-variable]
164 | float weight = 1.0;
| ^~~~~~
moran_for_rasters.cpp: In function ‘Rcpp::NumericVector Elsa_fuzzy_matrix_window(arma::fcube, arma::mat, Rcpp::NumericMatrix)’:
moran_for_rasters.cpp:536:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
536 | for (i = 0; i < subcube.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~
moran_for_rasters.cpp:537:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
537 | for(j = 0; j < subcube.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~
moran_for_rasters.cpp:543:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
543 | for(ii = 0; ii < xj.n_elem ; ii++){
| ~~~^~~~~~~~~~~
moran_for_rasters.cpp:544:32: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
544 | for(jj = 0; jj < xj.n_elem ; jj++){
| ~~~^~~~~~~~~~~
moran_for_rasters.cpp:480:7: warning: variable ‘wr’ set but not used [-Wunused-but-set-variable]
480 | int wr,wc;
| ^~
moran_for_rasters.cpp:480:10: warning: variable ‘wc’ set but not used [-Wunused-but-set-variable]
480 | int wr,wc;
| ^~
moran_for_rasters.cpp: In function ‘double adj_spconsist_arr_window_globstd(arma::fcube, arma::fcube, arma::mat, double)’:
moran_for_rasters.cpp:671:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
671 | for (i = 0; i < subcube_dat.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~~~~~
moran_for_rasters.cpp:672:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
672 | for(j = 0; j < subcube_dat.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~~~~~
moran_for_rasters.cpp:742:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
742 | for (i = 0; i < subcube_dat.n_rows; i++){
| ~~^~~~~~~~~~~~~~~~~~~~
moran_for_rasters.cpp:743:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const arma::uword’ {aka ‘const unsigned int’} [-Wsign-compare]
743 | for(j = 0; j < subcube_dat.n_cols; j++){
| ~~^~~~~~~~~~~~~~~~~~~~
moran_for_rasters.cpp:613:27: warning: unused variable ‘nn’ [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:613:30: warning: unused variable ‘ii’ [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:613:33: warning: unused variable ‘jj’ [-Wunused-variable]
613 | int r,c,lr,hr,lc,hc,i,j,nn,ii,jj;
| ^~
moran_for_rasters.cpp:614:7: warning: unused variable ‘N’ [-Wunused-variable]
614 | int N = 0;
| ^
moran_for_rasters.cpp:615:7: warning: variable ‘wr’ set but not used [-Wunused-but-set-variable]
615 | int wr,wc;
| ^~
moran_for_rasters.cpp:615:10: warning: variable ‘wc’ set but not used [-Wunused-but-set-variable]
615 | int wr,wc;
| ^~
moran_for_rasters.cpp:616:7: warning: unused variable ‘counter’ [-Wunused-variable]
616 | int counter = 0;
| ^~~~~~~
moran_for_rasters.cpp:625:10: warning: unused variable ‘euc_dist’ [-Wunused-variable]
625 | double euc_dist, dij;
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c shared_functions.cpp -o shared_functions.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o geocmeans.so FCM_functions.o GFCM_functions.o RcppExports.o focal_cpp.o jaccard_idx.o moran_for_rasters.o shared_functions.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/RtmpALY7by/R.INSTALLd5c427ab95a11/geocmeans/src'
make[1]: Entering directory '/tmp/RtmpALY7by/R.INSTALLd5c427ab95a11/geocmeans/src'
make[1]: Leaving directory '/tmp/RtmpALY7by/R.INSTALLd5c427ab95a11/geocmeans/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-geocmeans/00new/geocmeans/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (geocmeans)