• using R Under development (unstable) (2024-12-19 r87451)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘fslr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘fslr’ version ‘2.25.3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘fslr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [11s/14s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   check_file.Rd: checkimg   fast.Rd: readnii   flirt.Rd: readnii   flirt_apply.Rd: readnii   fnirt.Rd: readnii   fnirt_with_affine.Rd: readnii   fnirt_with_affine_apply.Rd: readnii   fsl_anat.Rd: checkimg   fsl_applywarp.Rd: readnii   fsl_biascorrect.Rd: readnii   fsl_cluster.Rd: readnii   fsl_deface.Rd: readnii   fsl_resample.Rd: readnii   fslabs.Rd: readnii   fslacos.Rd: readnii   fsladd.Rd: readnii   fslasin.Rd: readnii   fslatan.Rd: readnii   fslbet.Rd: readnii   fslbin.Rd: readnii   fslbinv.Rd: readnii   fslchfiletype.Rd: readnii   fslcmd.Rd: readnii   fslcos.Rd: readnii   fslcpgeom.Rd: readnii   fsldilate.Rd: readnii   fsldiv.Rd: readnii   fsledge.Rd: readnii   fslepi_reg.Rd: readnii   fslerode.Rd: readnii   fslexp.Rd: readnii   fslfill.Rd: readnii   fslfill2.Rd: readnii   fslhd.Rd: checkimg   fslindex.Rd: readnii   fsllog.Rd: readnii   fslmask.Rd: readnii   fslmaths.Rd: readnii   fslmerge.Rd: readnii   fslmul.Rd: readnii   fslnan.Rd: readnii   fslnanm.Rd: readnii   fslor.Rd: readnii   fslorient.Rd: readnii   fslrand.Rd: readnii   fslrandn.Rd: readnii   fslrange.Rd: checkimg   fslrecip.Rd: readnii   fslrem.Rd: readnii   fslreorient2std.Rd: readnii   fslrobustfov.Rd: readnii   fslroi.Rd: readnii   fslsin.Rd: readnii   fslslicetimer.Rd: readnii   fslsmooth.Rd: readnii   fslsplit.Rd: readnii   fslsqr.Rd: readnii   fslsqrt.Rd: readnii   fslstats.Rd: checkimg   fslsub.Rd: readnii   fslsub2.Rd: readnii   fslswapdim.Rd: readnii   fsltan.Rd: readnii   fslthresh.Rd: readnii   fslval.Rd: checkimg   fslview.Rd: checkimg   fslvol.Rd: voxdim   fslxor.Rd: readnii   getForms.Rd: checkimg   mcflirt.Rd: readnii   melodic.Rd: checkimg   mni_img.Rd: nifti   readrpi.Rd: readnii   susan.Rd: readnii Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [3s/4s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [8s/11s] OK
• checking PDF version of manual ... [8s/10s] OK
• checking HTML version of manual ... [4s/7s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE