* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/fsbrain.Rcheck’
* using R Under development (unstable) (2025-02-28 r87840)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘fsbrain/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘fsbrain’ version ‘0.5.5’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘fsbrain’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/fsbrain-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking ‘build’ directory ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
* checking loading without being on the library search path ... [1s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [23s/26s] OK
* checking Rd files ... [1s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  brainview.sd.Rd: bg3d, par3d
  brainview.si.Rd: bg3d, par3d
  brainview.sr.Rd: bg3d, spin3d, par3d
  brainview.t4.Rd: bg3d, par3d
  brainview.t9.Rd: bg3d, par3d
  brainviews.Rd: par3d
  collayer.from.mask.data.Rd: makecmap
  collayer.from.morphlike.data.Rd: makecmap
  coloredmesh.from.annot.Rd: tmesh3d
  coloredmesh.from.color.Rd: tmesh3d
  coloredmesh.from.label.Rd: makecmap, tmesh3d
  coloredmesh.from.mask.Rd: makecmap, tmesh3d
  coloredmesh.from.morph.native.Rd: makecmap, tmesh3d
  coloredmesh.from.morph.standard.Rd: makecmap, tmesh3d
  coloredmesh.from.morphdata.Rd: makecmap, tmesh3d
  coloredmesh.from.preloaded.data.Rd: makecmap
  coloredmeshes.from.color.Rd: tmesh3d
  common.makecmap.range.Rd: makecmap
  cube3D.tris.Rd: triangles3d
  draw.colorbar.Rd: bgplot3d
  fs.coloredmesh.Rd: tmesh3d
  get.rglstyle.Rd: material3d, shade3d
  get.rglstyle.default.Rd: material3d, shade3d
  get.rglstyle.edges.Rd: shade3d
  get.rglstyle.glass.Rd: material3d, shade3d
  get.rglstyle.glass2.Rd: material3d, shade3d
  get.rglstyle.parameters.Rd: material3d
  get.rglstyle.semitransparent.Rd: material3d, shade3d
  get.rglstyle.shiny.Rd: material3d, shade3d
  highlight.vertices.on.subject.Rd: par3d
  rglactions.Rd: text3d
  rglvoxels.Rd: spheres3d, triangles3d
  vis.color.on.subject.Rd: par3d
  vis.coloredmeshes.Rd: par3d
  vis.coloredmeshes.rotating.Rd: spin3d, par3d
  vis.data.on.fsaverage.Rd: par3d, makecmap
  vis.data.on.subject.Rd: par3d, makecmap
  vis.fs.surface.Rd: makecmap
  vis.labeldata.on.subject.Rd: par3d, makecmap
  vis.mask.on.subject.Rd: par3d, makecmap
  vis.region.values.on.subject.Rd: par3d, makecmap
  vis.rotated.coloredmeshes.Rd: rotate3d
  vis.subject.annot.Rd: par3d
  vis.subject.label.Rd: par3d, makecmap
  vis.subject.morph.native.Rd: par3d, makecmap
  vis.subject.morph.standard.Rd: par3d, makecmap
  vis.subject.pre.Rd: par3d, makecmap
  vis.symmetric.data.on.subject.Rd: par3d, makecmap
  vislayout.from.coloredmeshes.Rd: par3d, material3d
  volvis.voxels.Rd: triangles3d
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking installed files from ‘inst/doc’ ... OK
* checking files in ‘vignettes’ ... OK
* checking examples ... [5s/6s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [14s/47s] OK
  Running ‘testthat_au.R’ [8s/37s]
  Running ‘testthat_vz.R’ [5s/10s]
* checking for unstated dependencies in vignettes ... OK
* checking package vignettes ... OK
* checking re-building of vignette outputs ... [7s/11s] OK
* checking PDF version of manual ... [12s/14s] OK
* checking HTML version of manual ... [8s/13s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE