• using R Under development (unstable) (2024-12-20 r87452)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘epiCo/DESCRIPTION’ ... OK
• this is package ‘epiCo’ version ‘1.0.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘epiCo’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [5s/7s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [1s/1s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [9s/11s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [31s/38s] ERROR   Running ‘testthat.R’ [31s/38s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/tests.html   > # * https://testthat.r-lib.org/reference/test_package.html#special-files   >   > library(testthat)   > library(epiCo)   >   > test_check("epiCo")   1 codes are invalid.   Remember that the circular plot does not distinguish by sex.   Non-leaf weights ignored   Non-leaf weights ignored   Remember that the circular plot does not distinguish by sex.   Non-leaf weights ignored   Data prior to 2013-12-29 were not used for the endemic channel calculation.   Data after2016-12-25 were not used for the endemic channel calculation.   Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.   Significant municipalities are:   05148 with High-Low (incidence - spatial correlation)   05318 with High-High (incidence - spatial correlation)   05440 with High-Low (incidence - spatial correlation)   05615 with Low-Low (incidence - spatial correlation)   Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.   Significant municipalities are:   05148 with High-Low (incidence - spatial correlation)   05318 with High-High (incidence - spatial correlation)   05440 with High-Low (incidence - spatial correlation)   05615 with Low-Low (incidence - spatial correlation)   Municipalities 05659, 91001 are not part of the neighborhood according to the selected thershold in hours. It wil be displayed as 'Not significant' but it was not included in the local moran's index analysis.   There are no influential municipalities to plot   [ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-spatiotemporal.R:78:3'): Morans Index errors and warnings are thrown ──   Error in `expect_message(morans_index(incidence_object, threshold = 12,       plot = TRUE), type = "list")`: Can't specify `...` without `pattern`.   Backtrace:       ▆    1. └─testthat::expect_message(...) at test-spatiotemporal.R:78:3    2. └─testthat:::expect_condition_matching(...)    3. └─testthat:::cnd_matcher(...)    4. └─cli::cli_abort(...)    5. └─rlang::abort(...)      [ FAIL 1 | WARN 8 | SKIP 0 | PASS 114 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [16s/23s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR