* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/ebvcube.Rcheck’
* using R Under development (unstable) (2025-02-28 r87840)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
gcc-14 (Debian 14.2.0-16) 14.2.0
GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘ebvcube/DESCRIPTION’ ... OK
* this is package ‘ebvcube’ version ‘0.3.3’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘ebvcube’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/ebvcube-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [0s/0s] OK
* checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the package can be unloaded cleanly ... [0s/0s] OK
* checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
* checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
* checking loading without being on the library search path ... [0s/0s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/15s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [23s/40s] ERROR
Running ‘testthat.R’ [23s/40s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> # This file is part of the standard setup for testthat.
> # It is recommended that you do not modify it.
> #
> # Where should you do additional test configuration?
> # Learn more about the roles of various files in:
> # * https://r-pkgs.org/tests.html
> # * https://testthat.r-lib.org/reference/test_package.html#special-files
>
> library(testthat)
> library(ebvcube)
>
> test_check("ebvcube")
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 194 ]
â•â• Failed tests â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•â•
── Error ('test-plots.R:4:3'): test ebv_trend mean ─────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_trend(file, "metric_1/ebv_cube", 1, "mean", verbose = FALSE) at test-plots.R:4:3
2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))
3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)
4. │ ├─data.all == fillvalue
5. │ └─data.all == fillvalue
6. │ └─base::stop(...)
7. └─base::.handleSimpleError(...)
8. └─base (local) h(simpleError(msg, call))
── Error ('test-plots.R:27:3'): test ebv_trend min ─────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_trend(file, "metric_1/ebv_cube", 1, "min", verbose = FALSE) at test-plots.R:27:3
2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))
3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)
4. │ ├─data.all == fillvalue
5. │ └─data.all == fillvalue
6. │ └─base::stop(...)
7. └─base::.handleSimpleError(...)
8. └─base (local) h(simpleError(msg, call))
── Error ('test-plots.R:37:3'): test ebv_trend max ─────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_trend(...) at test-plots.R:37:3
2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))
3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)
4. │ ├─data.all == fillvalue
5. │ └─data.all == fillvalue
6. │ └─base::stop(...)
7. └─base::.handleSimpleError(...)
8. └─base (local) h(simpleError(msg, call))
── Error ('test-plots.R:47:3'): test ebv_trend boxplot ─────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_trend(...) at test-plots.R:47:3
2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))
3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)
4. │ ├─data.all == fillvalue
5. │ └─data.all == fillvalue
6. │ └─base::stop(...)
7. └─base::.handleSimpleError(...)
8. └─base (local) h(simpleError(msg, call))
── Error ('test-plots.R:57:3'): test ebv_trend metric ──────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_trend(...) at test-plots.R:57:3
2. │ ├─base::replace(data.all, data.all == fillvalue, c(NA))
3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)
4. │ ├─data.all == fillvalue
5. │ └─data.all == fillvalue
6. │ └─base::stop(...)
7. └─base::.handleSimpleError(...)
8. └─base (local) h(simpleError(msg, call))
── Error ('test-plots.R:69:3'): test ebv_map 1 ─────────────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_map(...) at test-plots.R:69:3
2. │ ├─methods (local) `[<-`(`*tmp*`, data.all == nodata, value = `<lgl>`)
3. │ ├─data.all == nodata
4. │ └─data.all == nodata
5. │ └─base::stop(...)
6. └─base::.handleSimpleError(...)
7. └─base (local) h(simpleError(msg, call))
── Error ('test-plots.R:82:3'): test ebv_map: col_rev ──────────────────────────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_map(...) at test-plots.R:82:3
2. │ ├─methods (local) `[<-`(`*tmp*`, data.all == nodata, value = `<lgl>`)
3. │ ├─data.all == nodata
4. │ └─data.all == nodata
5. │ └─base::stop(...)
6. └─base::.handleSimpleError(...)
7. └─base (local) h(simpleError(msg, call))
── Error ('test-plots.R:97:3'): test ebv_map: no countries, one class only ─────
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_map(...) at test-plots.R:97:3
2. │ ├─methods (local) `[<-`(`*tmp*`, data.all == nodata, value = `<lgl>`)
3. │ ├─data.all == nodata
4. │ └─data.all == nodata
5. │ └─base::stop(...)
6. └─base::.handleSimpleError(...)
7. └─base (local) h(simpleError(msg, call))
── Error ('test-write.R:35:3'): test ebv_write and ebv_read DelayedMatrix Array ──
Error in `h(simpleError(msg, call))`: error in evaluating the argument 'i' in selecting a method for function '[<-': '==' between a DelayedArray object and an array is not supported yet
Backtrace:
â–†
1. ├─ebvcube::ebv_read(...) at test-write.R:35:3
2. │ ├─base::replace(h5array, h5array == fillvalue, c(NA))
3. │ │ └─methods (local) `[<-`(`*tmp*`, list, value = `<lgl>`)
4. │ ├─h5array == fillvalue
5. │ └─h5array == fillvalue
6. │ └─base::stop(...)
7. └─base::.handleSimpleError(...)
8. └─base (local) h(simpleError(msg, call))
[ FAIL 9 | WARN 0 | SKIP 0 | PASS 194 ]
Error: Test failures
Execution halted
* checking PDF version of manual ... [4s/6s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 ERROR