• using R Under development (unstable) (2025-01-29 r87668)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-12) 14.2.0     GNU Fortran (Debian 14.2.0-12) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘easyDifferentialGeneCoexpression/DESCRIPTION’ ... OK
• this is package ‘easyDifferentialGeneCoexpression’ version ‘1.4’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘easyDifferentialGeneCoexpression’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [11s/15s] OK
• checking whether the package can be loaded with stated dependencies ... [10s/11s] OK
• checking whether the package can be unloaded cleanly ... [11s/14s] OK
• checking whether the namespace can be loaded with stated dependencies ... [11s/14s] OK
• checking whether the namespace can be unloaded cleanly ... [12s/16s] OK
• checking loading without being on the library search path ... [12s/15s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [44s/58s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [11s/16s] ERROR Running examples in ‘easyDifferentialGeneCoexpression-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: easyDifferentialGeneCoexpression > ### Title: Function that computes the differential coexpression of a list > ### of probesets in a specific dataset and returns the most significant > ### pairs > ### Aliases: easyDifferentialGeneCoexpression > > ### ** Examples > > > probesetList <- c("200738_s_at", "217356_s_at", "206686_at") > verboseFlag <- "TRUE" > batchCorrection <- "TRUE" > signDiffCoexpressGenePairs <- easyDifferentialGeneCoexpression(probesetList, + "GSE3268", "description", "Normal", "Tumor", verboseFlag) Processed URL: https://ftp.ncbi.nlm.nih.gov/geo/series/GSE3nnn/GSE3268 Found 1 file(s) GSE3268_series_matrix.txt.gz Error in .Call(R_curl_fetch_memory, enc2utf8(url), handle, nonblocking) :   reached elapsed time limit Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [11s/16s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR