Check results for 'dhis2r'

using R Under development (unstable) (2024-11-03 r87286)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc-14 (Debian 14.2.0-6) 14.2.0 GNU Fortran (Debian 14.2.0-6) 14.2.0
running under: Debian GNU/Linux trixie/sid
using session charset: UTF-8
checking for file ‘dhis2r/DESCRIPTION’ ... OK
this is package ‘dhis2r’ version ‘0.2.1’
package encoding: UTF-8
checking package namespace information ... OK
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checking if there is a namespace ... OK
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checking for sufficient/correct file permissions ... OK
checking whether package ‘dhis2r’ can be installed ... OK See the install log for details.
checking package directory ... OK
checking for future file timestamps ... OK
checking ‘build’ directory ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [1s/1s] OK
checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
checking whether the package can be unloaded cleanly ... [1s/1s] OK
checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
checking loading without being on the library search path ... [1s/1s] OK
checking use of S3 registration ... OK
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checking contents of ‘data’ directory ... OK
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checking data for ASCII and uncompressed saves ... OK
checking installed files from ‘inst/doc’ ... OK
checking files in ‘vignettes’ ... OK
checking examples ... [1s/3s] ERROR Running examples in ‘dhis2r-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: Dhis2r > ### Title: Connect and pull/get data from a DHIS2 instance > ### Aliases: Dhis2r > > ### ** Examples > > # Load dhis2r > library(dhis2r) > # connect to the DHIS2 instance > dhis2_play_connection <- Dhis2r$new(base_url = "https://play.im.dhis2.org/stable-2-40-5", + username = "admin", + password = "district") > > # get all the available resources > dhis2_play_connection$get_metadata() [1] "https://play.im.dhis2.org/stable-2-40-5/api/resources" # A tibble: 89 × 4 displayName singular plural href <chr> <chr> <chr> <chr> 1 Indicator Groups indicatorGroup indic… http… 2 Organisation Unit Group Sets organisationUnitGroupSet organ… http… 3 Validation Notification Templates validationNotificationTemplate valid… http… 4 Legend Sets legendSet legen… http… 5 Categories category categ… http… 6 Program Data Elements programDataElement progr… http… 7 Tracked Entity Types trackedEntityType track… http… 8 External File Resources externalFileResource exter… http… 9 Program Indicator Groups programIndicatorGroup progr… http… 10 Event Reports eventReport event… http… # ℹ 79 more rows > > # get organisation Units with the default fields i.e c("name","id") > > dhis2_play_connection$get_metadata(endpoint = "organisationUnits") [1] "https://play.im.dhis2.org/stable-2-40-5/api/organisationUnits?fields=name%2Cid" # A tibble: 5 × 1 `response_data[[1]]` <named list> 1 <int [1]> 2 <int [1]> 3 <int [1]> 4 <chr [1]> 5 <int [1]> > > # get a vector of all possible fields of a organisation unit resource > dhis2_play_connection$get_metadata_fields(endpoint = "organisationUnits") [1] "https://play.im.dhis2.org/stable-2-40-5/api/organisationUnits?fields=%3Aall&paging=true&pageSize=1" [1] "access" "ancestors" "attributeValues" [4] "children" "code" "created" [7] "dataSets" "dimensionItem" "dimensionItemType" [10] "displayFormName" "displayName" "displayShortName" [13] "externalAccess" "favorite" "favorites" [16] "href" "id" "lastUpdated" [19] "leaf" "legendSets" "level" [22] "name" "openingDate" "organisationUnitGroups" [25] "parent" "path" "programs" [28] "sharing" "shortName" "translations" [31] "userAccesses" "userGroupAccesses" "users" > > # get organisation Units with additional fields i.e c("name","id", "level") > > dhis2_play_connection$get_metadata(endpoint = "organisationUnits", + fields = c("name","id", "level")) [1] "https://play.im.dhis2.org/stable-2-40-5/api/organisationUnits?fields=name%2Cid%2Clevel" # A tibble: 5 × 1 `response_data[[1]]` <named list> 1 <int [1]> 2 <int [1]> 3 <int [1]> 4 <chr [1]> 5 <int [1]> > > dhis2_play_connection$get_analytics(analytic = c("Uvn6LCg7dVU"), + org_unit = c("O6uvpzGd5pu", "fdc6uOvgoji"), + period = "LAST_12_MONTHS", + output_scheme = "NAME") Error in `req_perform()`: ! HTTP 409 Conflict. Backtrace: ▆ 1. └─dhis2_play_connection$get_analytics(...) 2. └─httr2::req_perform(...) 3. └─httr2:::handle_resp(req, resp, error_call = error_call) 4. └─httr2:::resp_abort(resp, req, body, call = error_call) 5. └─rlang::abort(...) Execution halted
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [1s/3s] OK Running ‘testthat.R’ [1s/3s]
checking for unstated dependencies in vignettes ... OK
checking package vignettes ... OK
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checking PDF version of manual ... [4s/6s] OK
checking HTML version of manual ... [0s/0s] OK
checking for non-standard things in the check directory ... OK
DONE

Status: 1 ERROR