• using R Under development (unstable) (2024-12-20 r87452)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘datacutr/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘datacutr’ version ‘0.2.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘datacutr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/9s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [7s/9s] ERROR   Running ‘testthat.R’ [7s/9s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(datacutr)   >   > test_check("datacutr")   [1] "At least 1 patient with missing datacut date."   [1] "At least 1 patient with missing datacut date, all records will be kept."   [1] "At least 1 patient with missing datacut date, all records will be kept."   [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-process_cut.R:180:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─datacutr::process_cut(...) at test-process_cut.R:180:3    2. └─datacutr::read_out(...)    3. └─rmarkdown::render(...)    4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    5. └─xfun::write_utf8(res, output)    6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    7. └─base::file(con, "w")   ── Error ('test-process_cut.R:224:3'): Test that Correct .Rmd file is ran successfully when read_out = TRUE ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─datacutr::process_cut(...) at test-process_cut.R:224:3    2. └─datacutr::read_out(...)    3. └─rmarkdown::render(...)    4. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    5. └─xfun::write_utf8(res, output)    6. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    7. └─base::file(con, "w")   ── Error ('test-read_out.R:79:3'): Correct .Rmd file is run successfully when fields contain correct data inputs ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─datacutr::read_out(...) at test-read_out.R:79:3    2. └─rmarkdown::render(...)    3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    4. └─xfun::write_utf8(res, output)    5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    6. └─base::file(con, "w")   ── Error ('test-read_out.R:95:3'): Correct .Rmd file is ran successfully when fields are empty ──   Error in `file(con, "w")`: cannot open the connection   Backtrace:       ▆    1. └─datacutr::read_out(out_path = tempdir()) at test-read_out.R:95:3    2. └─rmarkdown::render(...)    3. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)    4. └─xfun::write_utf8(res, output)    5. └─base::writeLines(enc2utf8(text), con, ..., useBytes = TRUE)    6. └─base::file(con, "w")      [ FAIL 4 | WARN 4 | SKIP 0 | PASS 55 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [15s/22s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR