Install log for 'comat'

* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘comat’ ...
** package ‘comat’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/tmp/Rtmpzv02WJ/R.INSTALL3537b4544eb6d/comat/src'
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c create_neighborhood.cpp -o create_neighborhood.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c get_class_index_map.cpp -o get_class_index_map.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c get_entropy.cpp -o get_entropy.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c get_normalized.cpp -o get_normalized.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c get_unique_values.cpp -o get_unique_values.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c it_metrics.cpp -o it_metrics.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c rcpp_get_cocoma.cpp -o rcpp_get_cocoma.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c rcpp_get_coma.cpp -o rcpp_get_coma.o
rcpp_get_coma.cpp: In function ‘Rcpp::IntegerMatrix rcpp_get_coma_internal(const Rcpp::IntegerMatrix&, arma::imat, std::vector<int, std::allocator<int> >)’:
rcpp_get_coma.cpp:54:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
   54 |                         neig_col < ncols &&
      |                         ~~~~~~~~~^~~~~~~
rcpp_get_coma.cpp:55:34: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const unsigned int’ [-Wsign-compare]
   55 |                         neig_row < nrows) {
      |                         ~~~~~~~~~^~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c rcpp_get_incoma.cpp -o rcpp_get_incoma.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c rcpp_get_vec.cpp -o rcpp_get_vec.o
rcpp_get_vec.cpp: In function ‘Rcpp::NumericVector rcpp_get_incove(Rcpp::List, bool, bool, std::string)’:
rcpp_get_vec.cpp:104:31: warning: comparison of integer expressions of different signedness: ‘std::size_t’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  104 |     for (std::size_t i = 0; i < x_len; ++i){
      |                             ~~^~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c rcpp_get_wecoma.cpp -o rcpp_get_wecoma.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I/usr/local/include -D_FORTIFY_SOURCE=3  -I../inst/include -fopenmp -fpic  -g -O2 -Wall -pedantic -mtune=native  -DR_NO_REMAP -c triangular_index.cpp -o triangular_index.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o comat.so RcppExports.o create_neighborhood.o get_class_index_map.o get_entropy.o get_normalized.o get_unique_values.o it_metrics.o rcpp_get_cocoma.o rcpp_get_coma.o rcpp_get_incoma.o rcpp_get_vec.o rcpp_get_wecoma.o triangular_index.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmpzv02WJ/R.INSTALL3537b4544eb6d/comat/src'
make[1]: Entering directory '/tmp/Rtmpzv02WJ/R.INSTALL3537b4544eb6d/comat/src'
make[1]: Leaving directory '/tmp/Rtmpzv02WJ/R.INSTALL3537b4544eb6d/comat/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-comat/00new/comat/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (comat)