• using R Under development (unstable) (2025-03-09 r87914)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-17) 14.2.0     GNU Fortran (Debian 14.2.0-17) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘cobs/DESCRIPTION’ ... OK
• this is package ‘cobs’ version ‘1.3-9’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘cobs’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-14 (Debian 14.2.0-17) 14.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/15s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [8s/10s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [34s/40s] NOTE   Running ‘0_pt-ex.R’ [2s/3s]   Running ‘ex1.R’ [5s/6s]   Running ‘ex2-long.R’ [6s/6s]   Running ‘ex3.R’ [2s/2s]   Comparing ‘ex3.Rout’ to ‘ex3.Rout.save’ ...15,16c15,16 < Warning message: < In cobs(weight, height, knots = weight, nknots = length(weight)) : --- > Warning messages: > 1: In cobs(weight, height, knots = weight, nknots = length(weight)) : 18a19,20 > 2: In cobs(weight, height, knots = weight, nknots = length(weight)) : > drqssbc2(): Not all flags are normal (== 1), ifl : 18   Running ‘multi-constr.R’ [3s/3s]   Comparing ‘multi-constr.Rout’ to ‘multi-constr.Rout.save’ ...56a57,80 > Warning messages: > 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 3: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 4: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 5: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 6: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 7: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 8: In cobs(x, y, trace = 3) : > drqssbc2(): Not all flags are normal (== 1), ifl : 18 136a161,178 > Warning in cobs(x, y, degree = 1, trace = 3) : > The algorithm has not converged after 100 iterations > Warning messages: > 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 3: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 4: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 5: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > 180a223,229 > Warning messages: > 1: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct > > 2: In rq.fit.sfn(Xeq, Yeq, tau = tau, rhs = rhs, control = rqCtrl) : > tiny diagonals replaced with Inf when calling blkfct >   Running ‘roof.R’ [3s/3s]   Comparing ‘roof.Rout’ to ‘roof.Rout.save’ ... OK   Running ‘small-ex.R’ [2s/3s]   Comparing ‘small-ex.Rout’ to ‘small-ex.Rout.save’ ...23a24,25 > Warning message: > In cobs(x, y) : drqssbc2(): Not all flags are normal (== 1), ifl : 18   Running ‘spline-ex.R’ [2s/2s]   Comparing ‘spline-ex.Rout’ to ‘spline-ex.Rout.save’ ... OK   Running ‘temp.R’ [2s/3s]   Comparing ‘temp.Rout’ to ‘temp.Rout.save’ ...444a445,446 > Warning in cobs(year, temp, knots.add = TRUE, degree = 1, constraint = "none", : > The algorithm has not converged after 100 iterations 453a456,457 > Warning in cobs(year, temp, nknots = 9, knots.add = TRUE, degree = 1, constraint = "none", : > The algorithm has not converged after 100 iterations 459,460c463,464 < coef[1:5]: -0.40655906, -0.31473700, 0.05651823, -0.05681818, 0.28681956 < R^2 = 72.56% ; empirical tau (over all): 54/113 = 0.4778761 (target tau= 0.5) --- > coef[1:5]: -0.39324840, -0.28115087, 0.05916295, -0.07465159, 0.31227753 > R^2 = 73.22% ; empirical tau (over all): 63/113 = 0.5575221 (target tau= 0.5) 465a470,473 > > **** ERROR in algorithm: ifl = 18 > > 467a476,478 > Warning message: > In cobs(year, temp, nknots = length(a50$knots), knots = a50$knot, : > drqssbc2(): Not all flags are normal (== 1), ifl : 18 469a481,482 > Warning in cobs(year, temp, nknots = length(a50$knots), knots = a50$knot, : > The algorithm has not converged after 100 iterations 475c488,490 < [1] 10 18 21 22 47 61 68 74 78 79 102 111 --- > [1] 1 2 9 10 17 18 20 21 22 23 26 27 35 36 42 47 48 49 52 > [20] 53 58 59 61 62 63 64 65 68 73 74 78 79 80 81 82 83 84 88 > [39] 90 91 94 98 100 101 102 104 108 109 111 112 477c492,495 < [1] 5 8 25 38 39 50 54 77 85 97 113 --- > [1] 3 4 5 6 7 8 11 12 13 14 15 16 19 24 25 28 29 30 31 > [20] 32 33 34 37 38 39 40 41 43 44 45 46 50 51 54 55 56 57 60 > [39] 66 67 69 70 71 72 75 76 77 85 86 87 89 92 93 95 96 97 99 > [58] 103 105 106 107 110 113   Running ‘wind.R’ [7s/8s]
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE