- using R Under development (unstable) (2024-08-06 r86981)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-13 (Debian 13.3.0-3) 13.3.0
GNU Fortran (Debian 13.3.0-3) 13.3.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘circhelp/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘circhelp’ version ‘1.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘circhelp’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [2s/3s] OK
- checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
- checking whether the package can be unloaded cleanly ... [2s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
- checking loading without being on the library search path ... [2s/3s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [11s/15s] OK
- checking Rd files ... [0s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking LazyData ... OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [15s/17s] OK
Examples with CPU (user + system) or elapsed time > 5s
user system elapsed
remove_cardinal_biases 10.092 0.188 11.512
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [61s/79s] ERROR
Running ‘testthat.R’ [61s/78s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(circhelp)
Loading required package: data.table
Loading required package: ggplot2
> library(circular)
Attaching package: 'circular'
The following objects are masked from 'package:stats':
sd, var
> library(BAMBI)
Attaching package: 'BAMBI'
The following object is masked from 'package:circular':
wind
>
> test_check("circhelp")
[1] "Difference between expected and observed correlation is 0.000005"
[1] "Difference between expected and observed correlation is -0.000061"
[1] "Difference between expected and observed correlation is 0.000000"
[ FAIL 1 | WARN 6032 | SKIP 0 | PASS 15 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test-functions.R:70:3'): conversion from circular SD to kappa works both ways ──
Error in `besselI(x, 1, expon.scaled = TRUE)`: non-numeric argument to mathematical function
Backtrace:
▆
1. ├─testthat::expect_lt(...) at test-functions.R:70:3
2. │ └─testthat::quasi_label(enquo(object), label, arg = "object")
3. │ └─rlang::eval_bare(expr, quo_get_env(quo))
4. └─circhelp::vm_kappa_to_circ_sd_deg(kappa_from_deg)
5. └─circhelp::vm_kappa_to_circ_sd(kappa)
6. └─circhelp:::a_fun(kappa)
7. └─base::besselI(x, 1, expon.scaled = TRUE)
[ FAIL 1 | WARN 6032 | SKIP 0 | PASS 15 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [30s/40s] OK
- checking PDF version of manual ... [4s/6s] OK
- checking HTML version of manual ... [1s/2s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR