• using R Under development (unstable) (2025-01-20 r87609)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-12) 14.2.0     GNU Fortran (Debian 14.2.0-12) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘bigGP/DESCRIPTION’ ... OK
• this is package ‘bigGP’ version ‘0.1.8’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘bigGP’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-14 (Debian 14.2.0-12) 14.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... NOTE   possible bashism in configure.ac line 43 (test -a/-o):   if test -n "${MPI_INCLUDE_PATH}" -a -z "${MPI_LIBPATH}" ; then   possible bashism in configure.ac line 46 (test -a/-o):   if test -z "${MPI_INCLUDE_PATH}" -a -n "${MPI_LIBPATH}" ; then   possible bashism in configure.ac line 85 (test -a/-o):     if test "$MPITYPE" = "UNKNOWN" -o "$MPITYPE" = "OPENMPI" ; then   possible bashism in configure.ac line 86 (test -a/-o):       if test "$SED" != "F" -a "$MPICC" != "F" -a "$OMPI_INFO" != "F" ; then   possible bashism in configure.ac line 125 (test -a/-o):         if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then   possible bashism in configure.ac line 143 (test -a/-o):       if test "$SED" != "F" -a "$MPICC" != "F" -a "$MPICH2VERSION" != "F" ; then   possible bashism in configure.ac line 183 (test -a/-o):         if test "${TMP_INC}" != "F" -a "${TMP_LIB}" != "F" ; then   possible bashism in configure.ac line 495 (test -a/-o):   if test "$MPITYPE" = "OPENMPI" -o "$MPITYPE" = "LAM" -o "$MPITYPE" = "MPICH2" -o "$MPITYPE" = "FPMPI"; then
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [6s/10s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   bigGP.exit.Rd: mpi.exit, mpi.quit Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [1s/1s] OK
• checking for unstated dependencies in ‘demo’ ... OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs