• using R Under development (unstable) (2025-12-20 r89211)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘behavr/DESCRIPTION’ ... OK
• this is package ‘behavr’ version ‘0.3.3’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/1s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘behavr’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [3s/5s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [4s/3s] ERROR Running examples in ‘behavr-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: bin_apply > ### Title: Bin a variable (typically time) and compute an aggregate for > ### each bin > ### Aliases: bin_apply bin_apply_all > > ### ** Examples > > metadata <- data.frame(id = paste0("toy_experiment|",1:5)) > dt <- toy_activity_data(metadata, duration = days(2)) > > # average by 30min time bins, default > dt_binned <- bin_apply_all(dt, moving) > # equivalent to > dt_binned <- dt[, bin_apply(.SD, moving), by = "id"] > > # if we want the opposite of moving: > dt_binned <- bin_apply_all(dt, !moving) > > # More advanced usage > dt <- toy_dam_data(metadata, duration = days(2)) Error in `[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - :   attempt access index 5/5 in VECTOR_ELT Calls: toy_dam_data -> [ -> [.behavr -> NextMethod -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/5s] ERROR   Running ‘testthat.R’ [4s/4s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(behavr)   Loading required package: data.table      Attaching package: 'data.table'      The following object is masked from 'package:base':          %notin%      >   > test_check("behavr")   Saving _problems/test-behavr-157.R       ==== METADATA ====      Key: <id>         id condition sex      <int> <char> <char>   1: 1 a M   2: 2 b M   3: 3 c M   4: 4 d F   5: 5 e F       ====== DATA ======      Key: <id>           id t x y eating        <int> <int> <num> <num> <lgcl>     1: 1 1 -0.6264538 -0.62036668 TRUE     2: 1 2 0.1836433 0.04211587 FALSE     3: 1 3 -0.8356286 -0.91092165 TRUE     4: 1 4 1.5952808 0.15802877 TRUE     5: 1 5 0.3295078 -0.65458464 TRUE    ---   496: 5 96 -2.0908461 -0.30824994 TRUE   497: 5 97 1.6973939 0.01551524 FALSE   498: 5 98 1.0638812 -0.44231772 TRUE   499: 5 99 -0.7666166 -1.63800773 FALSE   500: 5 100 0.3820076 -0.64140116 FALSE   behavr table with:    5 individuals    2 metavariables    4 variables    5e+02 measurements    1 key (id)       Summary of each individual (one per row):   Key: <id>         id condition sex data_points time_range      <int> <char> <char> <int> <char>   1: 1 a M 100 [1 -> 100 (99)]   2: 2 b M 100 [1 -> 100 (99)]   3: 3 c M 100 [1 -> 100 (99)]   4: 4 d F 100 [1 -> 100 (99)]   5: 5 e F 100 [1 -> 100 (99)]   behavr table with:    5 individuals    2 metavariables    4 variables    5e+02 measurements    1 key (id)   Saving _problems/test-stitch_on-23.R   Saving _problems/test-stitch_on-74.R   Saving _problems/test-toy-data-13.R   [ FAIL 4 | WARN 0 | SKIP 2 | PASS 74 ]      ══ Skipped tests (2) ═══════════════════════════════════════════════════════════   • empty test (2): 'test-print_summary.R:3:1', 'test-print_summary.R:12:1'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-behavr.R:157:3'): metadata columns can be extracted without id ──   Error in ``[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id")`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. └─behavr::toy_dam_data(metadata = met, duration = hours(1)) at test-behavr.R:157:3    2. ├─out[, `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id"]    3. ├─behavr:::`[.behavr`(...)    4. ├─base::NextMethod()    5. └─data.table:::`[.data.table`(...)   ── Error ('test-stitch_on.R:23:3'): stitch works ───────────────────────────────   Error in ``[.data.table`(md, , `:=`(lag, as.numeric(as.Date(time_ref__) - as.Date(min(time_ref__)), units = "secs")), by = on)`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. └─behavr::stitch_on(d, on = "uid") at test-stitch_on.R:23:3    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Failure ('test-stitch_on.R:74:3'): stitch fails when overlap ────────────────   `stitch_on(d, on = "uid")` threw an error with unexpected message.   Expected match: "overlap"   Actual message: "attempt access index 5/5 in VECTOR_ELT"   Backtrace:       ▆    1. ├─testthat::expect_error(stitch_on(d, on = "uid"), "overlap") at test-stitch_on.R:74:3    2. │ └─testthat:::quasi_capture(...)    3. │ ├─testthat (local) .capture(...)    4. │ │ └─base::withCallingHandlers(...)    5. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))    6. └─behavr::stitch_on(d, on = "uid")    7. ├─...[]    8. └─data.table:::`[.data.table`(...)   ── Error ('test-toy-data.R:13:3'): toy data returns behavr object ──────────────   Error in ``[.data.table`(out, , `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id")`: attempt access index 5/5 in VECTOR_ELT   Backtrace:       ▆    1. └─behavr::toy_dam_data() at test-toy-data.R:13:3    2. ├─out[, `:=`(activity, abs(c(0, diff(sign(0.5 - x))))), by = "id"]    3. ├─behavr:::`[.behavr`(...)    4. ├─base::NextMethod()    5. └─data.table:::`[.data.table`(...)      [ FAIL 4 | WARN 0 | SKIP 2 | PASS 74 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs