* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/atom4R.Rcheck’
* using R Under development (unstable) (2025-02-25 r87824)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘atom4R/DESCRIPTION’ ... OK
* this is package ‘atom4R’ version ‘0.3-3’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking serialization versions ... OK
* checking whether package ‘atom4R’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/atom4R-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [2s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
* checking whether the package can be unloaded cleanly ... [2s/2s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
* checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
* checking loading without being on the library search path ... [2s/2s] OK
* checking whether startup messages can be suppressed ... [2s/2s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [11s/15s] OK
* checking Rd files ... [2s/2s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  AtomAbstractObject.Rd: R6Class, XMLInternalNode-class
  AtomAuthor.Rd: R6Class, XMLInternalNode-class
  AtomCategory.Rd: XMLInternalNode-class
  AtomContributor.Rd: R6Class, XMLInternalNode-class
  AtomEntry.Rd: R6Class, XMLInternalNode-class
  AtomFeed.Rd: R6Class, XMLInternalNode-class
  AtomLink.Rd: R6Class, XMLInternalNode-class
  AtomNamespace.Rd: R6Class
  AtomPerson.Rd: R6Class, XMLInternalNode-class
  AtomPubClient.Rd: R6Class
  DCAbstract.Rd: R6Class, XMLInternalNode-class
  DCAccessRights.Rd: R6Class, XMLInternalNode-class
  DCAccrualMethod.Rd: R6Class, XMLInternalNode-class
  DCAccrualPeriodicity.Rd: R6Class, XMLInternalNode-class
  DCAccrualPolicy.Rd: R6Class, XMLInternalNode-class
  DCAlternative.Rd: R6Class, XMLInternalNode-class
  DCAudience.Rd: R6Class, XMLInternalNode-class
  DCAvailable.Rd: R6Class, XMLInternalNode-class
  DCBibliographicCitation.Rd: R6Class, XMLInternalNode-class
  DCConformsTo.Rd: R6Class, XMLInternalNode-class
  DCContributor.Rd: R6Class, XMLInternalNode-class
  DCCoverage.Rd: R6Class, XMLInternalNode-class
  DCCreated.Rd: R6Class, XMLInternalNode-class
  DCCreator.Rd: R6Class, XMLInternalNode-class
  DCDate.Rd: R6Class, XMLInternalNode-class
  DCDateAccepted.Rd: R6Class, XMLInternalNode-class
  DCDateCopyrighted.Rd: R6Class, XMLInternalNode-class
  DCDateSubmitted.Rd: R6Class, XMLInternalNode-class
  DCDescription.Rd: R6Class, XMLInternalNode-class
  DCEducationalLevel.Rd: R6Class, XMLInternalNode-class
  DCElement.Rd: R6Class, XMLInternalNode-class
  DCEntry.Rd: R6Class, XMLInternalNode-class
  DCExtent.Rd: R6Class, XMLInternalNode-class
  DCFormat.Rd: R6Class, XMLInternalNode-class
  DCHasPart.Rd: R6Class, XMLInternalNode-class
  DCHasVersion.Rd: R6Class, XMLInternalNode-class
  DCIdentifier.Rd: R6Class, XMLInternalNode-class
  DCInstructionalMethod.Rd: R6Class, XMLInternalNode-class
  DCIsPartOf.Rd: R6Class, XMLInternalNode-class
  DCIsReferencedBy.Rd: R6Class, XMLInternalNode-class
  DCIsReplacedBy.Rd: R6Class, XMLInternalNode-class
  DCIsRequiredBy.Rd: R6Class, XMLInternalNode-class
  DCIsVersionOf.Rd: R6Class, XMLInternalNode-class
  DCIssued.Rd: R6Class, XMLInternalNode-class
  DCLanguage.Rd: R6Class, XMLInternalNode-class
  DCLicense.Rd: R6Class, XMLInternalNode-class
  DCMIVocabulary.Rd: R6Class
  DCMediator.Rd: R6Class, XMLInternalNode-class
  DCMedium.Rd: R6Class, XMLInternalNode-class
  DCModified.Rd: R6Class, XMLInternalNode-class
  DCProvenance.Rd: R6Class, XMLInternalNode-class
  DCPublisher.Rd: R6Class, XMLInternalNode-class
  DCReferences.Rd: R6Class, XMLInternalNode-class
  DCRelation.Rd: R6Class, XMLInternalNode-class
  DCReplaces.Rd: R6Class, XMLInternalNode-class
  DCRequires.Rd: R6Class, XMLInternalNode-class
  DCRights.Rd: R6Class, XMLInternalNode-class
  DCRightsHolder.Rd: R6Class, XMLInternalNode-class
  DCSource.Rd: R6Class, XMLInternalNode-class
  DCSpatial.Rd: R6Class, XMLInternalNode-class
  DCSubject.Rd: R6Class, XMLInternalNode-class
  DCTableOfContents.Rd: R6Class, XMLInternalNode-class
  DCTemporal.Rd: R6Class, XMLInternalNode-class
  DCTitle.Rd: R6Class, XMLInternalNode-class
  DCType.Rd: R6Class, XMLInternalNode-class
  DCValid.Rd: R6Class, XMLInternalNode-class
  SwordClient.Rd: R6Class
  SwordDataverseClient.Rd: R6Class
  SwordHalClient.Rd: R6Class
  SwordServiceDocument.Rd: R6Class, XMLInternalNode-class
  atom4RLogger.Rd: R6Class
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... [4s/5s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [4s/5s] OK
  Running ‘test-all.R’ [4s/5s]
* checking PDF version of manual ... [12s/15s] OK
* checking HTML version of manual ... [6s/7s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE