Check results for 'abclass'

using R Under development (unstable) (2025-12-24 r89227)
using platform: x86_64-pc-linux-gnu
R was compiled by gcc-15 (Debian 15.2.0-11) 15.2.0 GNU Fortran (Debian 15.2.0-11) 15.2.0
running under: Debian GNU/Linux forky/sid
using session charset: UTF-8
checking for file ‘abclass/DESCRIPTION’ ... OK
this is package ‘abclass’ version ‘0.5.0’
package encoding: UTF-8
checking CRAN incoming feasibility ... [1s/2s] OK
checking package namespace information ... OK
checking package dependencies ... INFO Package suggested but not available for checking: ‘qpmadr’
checking if this is a source package ... OK
checking if there is a namespace ... OK
checking for executable files ... OK
checking for hidden files and directories ... OK
checking for portable file names ... OK
checking for sufficient/correct file permissions ... OK
checking whether package ‘abclass’ can be installed ... OK See the install log for details.
used C++ compiler: ‘g++-15 (Debian 15.2.0-11) 15.2.0’
checking package directory ... OK
checking for future file timestamps ... OK
checking DESCRIPTION meta-information ... OK
checking top-level files ... OK
checking for left-over files ... OK
checking index information ... OK
checking package subdirectories ... OK
checking code files for non-ASCII characters ... OK
checking R files for syntax errors ... OK
checking whether the package can be loaded ... [0s/1s] OK
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checking whether the package can be unloaded cleanly ... [0s/1s] OK
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checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
checking loading without being on the library search path ... [0s/0s] OK
checking use of S3 registration ... OK
checking dependencies in R code ... OK
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checking R code for possible problems ... [6s/9s] OK
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checking for missing documentation entries ... OK
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checking for unstated dependencies in examples ... OK
checking line endings in C/C++/Fortran sources/headers ... OK
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checking for GNU extensions in Makefiles ... OK
checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
checking use of PKG_*FLAGS in Makefiles ... OK
checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
checking pragmas in C/C++ headers and code ... OK
checking compilation flags used ... OK
checking compiled code ... OK
checking examples ... [0s/1s] ERROR Running examples in ‘abclass-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: supclass > ### Title: Multi-Category Classifiers with Sup-Norm Regularization > ### Aliases: supclass supclass.control > > ### ** Examples > > library(abclass) > set.seed(123) > > ## toy examples for demonstration purpose > ## reference: example 1 in Zhang and Liu (2014) > ntrain <- 100 # size of training set > ntest <- 1000 # size of testing set > p0 <- 2 # number of actual predictors > p1 <- 2 # number of random predictors > k <- 3 # number of categories > > n <- ntrain + ntest; p <- p0 + p1 > train_idx <- seq_len(ntrain) > y <- sample(k, size = n, replace = TRUE) # response > mu <- matrix(rnorm(p0 * k), nrow = k, ncol = p0) # mean vector > ## normalize the mean vector so that they are distributed on the unit circle > mu <- mu / apply(mu, 1, function(a) sqrt(sum(a ^ 2))) > x0 <- t(sapply(y, function(i) rnorm(p0, mean = mu[i, ], sd = 0.25))) > x1 <- matrix(rnorm(p1 * n, sd = 0.3), nrow = n, ncol = p1) > x <- cbind(x0, x1) > train_x <- x[train_idx, ] > test_x <- x[- train_idx, ] > y <- factor(paste0("label_", y)) > train_y <- y[train_idx] > test_y <- y[- train_idx] > > ## regularization with the supnorm lasso penalty > options("mc.cores" = 1) > model <- supclass(train_x, train_y, model = "psvm", penalty = "lasso") Error: The package 'qpmadr' is needed but not available. Execution halted
checking for unstated dependencies in ‘tests’ ... OK
checking tests ... [2s/3s] ERROR Running ‘tinytest.R’ [2s/3s] Running the tests in ‘tests/tinytest.R’ failed. Complete output: > if (requireNamespace("tinytest", quietly = TRUE) && + utils::packageVersion("tinytest") >= "1.2.2") { + set.seed(808) + tinytest::test_package("abclass", ncpu = NULL, + side_effects = TRUE) + } test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 0 tests test-abclass.R................ 1 tests [0;32mOK [0m test-abclass.R................ 2 tests [0;32mOK [0m test-abclass.R................ 2 tests [0;32mOK [0m test-abclass.R................ 2 tests [0;32mOK [0m test-abclass.R................ 3 tests [0;32mOK [0m test-abclass.R................ 4 tests [0;32mOK [0m test-abclass.R................ 4 tests [0;32mOK [0m test-abclass.R................ 4 tests [0;32mOK [0m test-abclass.R................ 5 tests [0;32mOK [0m test-abclass.R................ 6 tests [0;32mOK [0m test-abclass.R................ 6 tests [0;32mOK [0m test-abclass.R................ 6 tests [0;32mOK [0m test-abclass.R................ 7 tests [0;32mOK [0m test-abclass.R................ 7 tests [0;32mOK [0m test-abclass.R................ 7 tests [0;32mOK [0m test-abclass.R................ 8 tests [0;32mOK [0m test-abclass.R................ 9 tests [0;32mOK [0m test-abclass.R................ 10 tests [0;32mOK [0m test-abclass.R................ 11 tests [0;32mOK [0m test-abclass.R................ 12 tests [0;32mOK [0m test-abclass.R................ 12 tests [0;32mOK [0m test-abclass.R................ 13 tests [0;32mOK [0m test-abclass.R................ 13 tests [0;32mOK [0m test-abclass.R................ 13 tests [0;32mOK [0m test-abclass.R................ 14 tests [0;32mOK [0m [0;34m2.0s [0m test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 0 tests test-cv.abclass.R............. 1 tests [0;32mOK [0m test-cv.abclass.R............. 2 tests [0;32mOK [0m test-cv.abclass.R............. 2 tests [0;32mOK [0m test-cv.abclass.R............. 2 tests [0;32mOK [0m test-cv.abclass.R............. 3 tests [0;32mOK [0m test-cv.abclass.R............. 4 tests [0;32mOK [0m test-cv.abclass.R............. 4 tests [0;32mOK [0m test-cv.abclass.R............. 4 tests [0;32mOK [0m test-cv.abclass.R............. 5 tests [0;32mOK [0m test-cv.abclass.R............. 6 tests [0;32mOK [0m test-cv.abclass.R............. 6 tests [0;32mOK [0m test-cv.abclass.R............. 6 tests [0;32mOK [0m test-cv.abclass.R............. 7 tests [0;32mOK [0m test-cv.abclass.R............. 8 tests [0;32mOK [0m test-cv.abclass.R............. 8 tests [0;32mOK [0m test-cv.abclass.R............. 9 tests [0;32mOK [0m test-cv.abclass.R............. 9 tests [0;32mOK [0m test-cv.abclass.R............. 10 tests [0;32mOK [0m test-cv.abclass.R............. 10 tests [0;32mOK [0m test-cv.abclass.R............. 11 tests [0;32mOK [0m test-cv.abclass.R............. 11 tests [0;32mOK [0m test-cv.abclass.R............. 12 tests [0;32mOK [0m test-cv.abclass.R............. 13 tests [0;32mOK [0m test-cv.abclass.R............. 13 tests [0;32mOK [0m test-cv.abclass.R............. 14 tests [0;32mOK [0m test-cv.abclass.R............. 15 tests [0;32mOK [0m [0;34m0.5s [0m test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests test-cv.supclass.R............ 0 tests Error: The package 'qpmadr' is needed but not available. Execution halted
checking PDF version of manual ... [5s/7s] OK
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checking for non-standard things in the check directory ... OK
DONE

Status: 2 ERRORs