• using R Under development (unstable) (2025-03-31 r88080)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-19) 14.2.0     GNU Fortran (Debian 14.2.0-19) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘VirtualPop/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘VirtualPop’ version ‘2.0.2’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘VirtualPop’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [4s/6s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [4s/4s] OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [26s/35s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘MultistateLH.Rmd’ using knitr Error: processing vignette 'MultistateLH.Rmd' failed with diagnostics: 412:60: unexpected symbol 411: key = "brostrom2021event", 412: author = c(person(family = "Brostr{\\{}{\\backslash}"o                                                                 ^ --- failed re-building ‘MultistateLH.Rmd’ --- re-building ‘Piecewise_exponential.Rmd’ using knitr ** Processing: figure/fig1-1.png 504x504 pixels, 8 bits/pixel, 192 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 4118 bytes Input file size = 4784 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 3196   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3195   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 3195 Output IDAT size = 3195 bytes (923 bytes decrease) Output file size = 3273 bytes (1511 bytes = 31.58% decrease) ** Processing: figure/unnamed-chunk-5-1.png 504x504 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8077 bytes Input file size = 8935 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6800   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6800 Output IDAT size = 6800 bytes (1277 bytes decrease) Output file size = 6878 bytes (2057 bytes = 23.02% decrease) ** Processing: figure/unnamed-chunk-6-1.png 504x504 pixels, 8 bits/pixel, 255 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 8182 bytes Input file size = 9037 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6827   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 6827 Output IDAT size = 6827 bytes (1355 bytes decrease) Output file size = 6905 bytes (2132 bytes = 23.59% decrease) ** Processing: figure/2_pwc3-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 19211 bytes Input file size = 19313 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17421   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17421 Output IDAT size = 17421 bytes (1790 bytes decrease) Output file size = 17499 bytes (1814 bytes = 9.39% decrease) ** Processing: figure/unnamed-chunk-14-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 28039 bytes Input file size = 28153 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23259   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23259 Output IDAT size = 23259 bytes (4780 bytes decrease) Output file size = 23337 bytes (4816 bytes = 17.11% decrease) ** Processing: figure/2_test16-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 24564 bytes Input file size = 24666 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20613   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 20613 Output IDAT size = 20613 bytes (3951 bytes decrease) Output file size = 20691 bytes (3975 bytes = 16.12% decrease) Error: processing vignette 'Piecewise_exponential.Rmd' failed with diagnostics: 412:60: unexpected symbol 411: key = "brostrom2021event", 412: author = c(person(family = "Brostr{\\{}{\\backslash}"o                                                                 ^ --- failed re-building ‘Piecewise_exponential.Rmd’ --- re-building ‘Tutorial.Rmd’ using knitr ** Processing: figure/unnamed-chunk-32-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 43074 bytes Input file size = 43212 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37684   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 37684 Output IDAT size = 37684 bytes (5390 bytes decrease) Output file size = 37762 bytes (5450 bytes = 12.61% decrease) ** Processing: figure/unnamed-chunk-38-1.png 504x504 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16741 bytes Input file size = 16843 bytes Trying:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15325   zc = 9 zm = 8 zs = 1 f = 0   zc = 1 zm = 8 zs = 2 f = 0   zc = 9 zm = 8 zs = 3 f = 0   zc = 9 zm = 8 zs = 0 f = 5   zc = 9 zm = 8 zs = 1 f = 5   zc = 1 zm = 8 zs = 2 f = 5   zc = 9 zm = 8 zs = 3 f = 5                                 Selecting parameters:   zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15325 Output IDAT size = 15325 bytes (1416 bytes decrease) Output file size = 15403 bytes (1440 bytes = 8.55% decrease) Error: processing vignette 'Tutorial.Rmd' failed with diagnostics: 412:60: unexpected symbol 411: key = "brostrom2021event", 412: author = c(person(family = "Brostr{\\{}{\\backslash}"o                                                                 ^ --- failed re-building ‘Tutorial.Rmd’ SUMMARY: processing the following files failed:   ‘MultistateLH.Rmd’ ‘Piecewise_exponential.Rmd’ ‘Tutorial.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR