* installing to library ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages’
* installing *source* package ‘VIC5’ ...
** package ‘VIC5’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
make[1]: Entering directory '/tmp/Rtmp6cnLFb/R.INSTALL253e407f1639fe/VIC5/src'
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/advected_sensible_heat.c -o vic/vic_run/src/advected_sensible_heat.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/alloc_and_free.c -o vic/vic_run/src/alloc_and_free.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/arno_evap.c -o vic/vic_run/src/arno_evap.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/calc_atmos_energy_bal.c -o vic/vic_run/src/calc_atmos_energy_bal.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/calc_gridcell_avg_albedo.c -o vic/vic_run/src/calc_gridcell_avg_albedo.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/calc_Nscale_factors.c -o vic/vic_run/src/calc_Nscale_factors.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/calc_rainonly.c -o vic/vic_run/src/calc_rainonly.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/calc_snow_coverage.c -o vic/vic_run/src/calc_snow_coverage.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/calc_surf_energy_bal.c -o vic/vic_run/src/calc_surf_energy_bal.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/calc_veg_params.c -o vic/vic_run/src/calc_veg_params.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/CalcAerodynamic.c -o vic/vic_run/src/CalcAerodynamic.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/CalcBlowingSnow.c -o vic/vic_run/src/CalcBlowingSnow.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/canopy_assimilation.c -o vic/vic_run/src/canopy_assimilation.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/canopy_evap.c -o vic/vic_run/src/canopy_evap.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/comparisons.c -o vic/vic_run/src/comparisons.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/compute_coszen.c -o vic/vic_run/src/compute_coszen.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/compute_derived_lake_dimensions.c -o vic/vic_run/src/compute_derived_lake_dimensions.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/compute_pot_evap.c -o vic/vic_run/src/compute_pot_evap.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/compute_soil_resp.c -o vic/vic_run/src/compute_soil_resp.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/compute_zwt.c -o vic/vic_run/src/compute_zwt.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/correct_precip.c -o vic/vic_run/src/correct_precip.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/estimate_T1.c -o vic/vic_run/src/estimate_T1.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/faparl.c -o vic/vic_run/src/faparl.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/frozen_soil.c -o vic/vic_run/src/frozen_soil.o
vic/vic_run/src/frozen_soil.c: In function ‘fda_heat_eqn’:
vic/vic_run/src/frozen_soil.c:704:5: warning: multi-line comment [-Wcomment]
704 | //#pragma omp threadprivate(deltat, NOFLUX, EXP_TRANS, T0, moist, ice, \
| ^
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/func_atmos_energy_bal.c -o vic/vic_run/src/func_atmos_energy_bal.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/func_atmos_moist_bal.c -o vic/vic_run/src/func_atmos_moist_bal.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/func_canopy_energy_bal.c -o vic/vic_run/src/func_canopy_energy_bal.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/func_surf_energy_bal.c -o vic/vic_run/src/func_surf_energy_bal.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/ice_melt.c -o vic/vic_run/src/ice_melt.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/IceEnergyBalance.c -o vic/vic_run/src/IceEnergyBalance.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/initialize_lake.c -o vic/vic_run/src/initialize_lake.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/interpoloation.c -o vic/vic_run/src/interpoloation.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/lake_utils.c -o vic/vic_run/src/lake_utils.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/lakes.eb.c -o vic/vic_run/src/lakes.eb.o
vic/vic_run/src/lakes.eb.c: In function ‘water_balance’:
vic/vic_run/src/lakes.eb.c:2179:23: warning: ‘k’ may be used uninitialized [-Wmaybe-uninitialized]
2179 | lake->temp[k] = all_vars->energy[iveg][band].Tsurf;
| ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vic/vic_run/src/lakes.eb.c:1833:35: note: ‘k’ was declared here
1833 | size_t j, k, frost_area;
| ^
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/latent_heat_from_snow.c -o vic/vic_run/src/latent_heat_from_snow.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/massrelease.c -o vic/vic_run/src/massrelease.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/newt_raph_func_fast.c -o vic/vic_run/src/newt_raph_func_fast.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/penman.c -o vic/vic_run/src/penman.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/photosynth.c -o vic/vic_run/src/photosynth.o
vic/vic_run/src/photosynth.c: In function ‘photosynth’:
vic/vic_run/src/photosynth.c:71:30: warning: ‘r0’ may be used uninitialized [-Wmaybe-uninitialized]
71 | double r0;
| ^~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/physics.c -o vic/vic_run/src/physics.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/prepare_full_energy.c -o vic/vic_run/src/prepare_full_energy.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/root_brent.c -o vic/vic_run/src/root_brent.o
vic/vic_run/src/root_brent.c: In function ‘root_brent’:
vic/vic_run/src/root_brent.c:219:34: warning: ‘last_bad’ may be used uninitialized [-Wmaybe-uninitialized]
219 | c = 0.5 * (last_good + last_bad);
| ~~~~~~~~~~~^~~~~~~~~~~
vic/vic_run/src/root_brent.c:94:30: note: ‘last_bad’ was declared here
94 | double last_bad;
| ^~~~~~~~
vic/vic_run/src/root_brent.c:294:17: warning: ‘e’ may be used uninitialized [-Wmaybe-uninitialized]
294 | if (fabs(e) < tol || fabs(fa) <= fabs(fb)) {
| ^~~~~~~
vic/vic_run/src/root_brent.c:84:30: note: ‘e’ was declared here
84 | double e;
| ^
vic/vic_run/src/root_brent.c:287:22: warning: ‘c’ may be used uninitialized [-Wmaybe-uninitialized]
287 | m = 0.5 * (c - b);
| ~~~^~~~
vic/vic_run/src/root_brent.c:82:30: note: ‘c’ was declared here
82 | double c;
| ^
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/runoff.c -o vic/vic_run/src/runoff.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/snow_intercept.c -o vic/vic_run/src/snow_intercept.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/snow_melt.c -o vic/vic_run/src/snow_melt.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/snow_utility.c -o vic/vic_run/src/snow_utility.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/SnowPackEnergyBalance.c -o vic/vic_run/src/SnowPackEnergyBalance.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/soil_carbon_balance.c -o vic/vic_run/src/soil_carbon_balance.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/soil_conduction.c -o vic/vic_run/src/soil_conduction.o
vic/vic_run/src/soil_conduction.c: In function ‘estimate_frost_temperature_and_depth’:
vic/vic_run/src/soil_conduction.c:408:35: warning: ‘tmp_fract’ may be used uninitialized [-Wmaybe-uninitialized]
408 | tmp_fract += (frost_fract[frost_area - 1] / 2. +
| ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
409 | frost_fract[frost_area] / 2.);
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vic/vic_run/src/soil_conduction.c:339:46: note: ‘tmp_fract’ was declared here
339 | double min_temp, max_temp, tmp_fract;
| ^~~~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/soil_thermal_eqn.c -o vic/vic_run/src/soil_thermal_eqn.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/solve_snow.c -o vic/vic_run/src/solve_snow.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/StabilityCorrection.c -o vic/vic_run/src/StabilityCorrection.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/surface_fluxes.c -o vic/vic_run/src/surface_fluxes.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/svp.c -o vic/vic_run/src/svp.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/vic_run.c -o vic/vic_run/src/vic_run.o
vic/vic_run/src/vic_run.c: In function ‘vic_run’:
vic/vic_run/src/vic_run.c:380:5: warning: ‘overstory’ may be used uninitialized [-Wmaybe-uninitialized]
380 | calc_gridcell_avg_albedo(&all_vars->gridcell_avg.avg_albedo,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
381 | force->shortwave[NR], Nveg, overstory,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
382 | all_vars->energy, all_vars->snow, veg_con,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
383 | soil_con);
| ~~~~~~~~~
vic/vic_run/src/vic_run.c:54:30: note: ‘overstory’ was declared here
54 | char overstory;
| ^~~~~~~~~
vic/vic_run/src/vic_run.c:402:30: warning: ‘lakefrac’ may be used uninitialized [-Wmaybe-uninitialized]
402 | Cv *= (1 - lakefrac);
| ~~~^~~~~~~~~~~
vic/vic_run/src/vic_run.c:88:30: note: ‘lakefrac’ was declared here
88 | double lakefrac;
| ^~~~~~~~
vic/vic_run/src/vic_run.c:462:21: warning: ‘fraci’ may be used uninitialized [-Wmaybe-uninitialized]
462 | ErrorFlag = solve_lake(snowprec, rainprec, force->air_temp[NR],
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
463 | force->wind[NR], force->vp[NR] / PA_PER_KPA,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
464 | force->shortwave[NR], force->longwave[NR],
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
465 | force->vpd[NR] / PA_PER_KPA,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
466 | force->pressure[NR] / PA_PER_KPA,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
467 | force->density[NR], lake_var,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
468 | *soil_con, gp->dt, gp->wind_h, *dmy,
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
469 | fraci);
| ~~~~~~
vic/vic_run/src/vic_run.c:89:30: note: ‘fraci’ was declared here
89 | double fraci;
| ^~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/water_energy_balance.c -o vic/vic_run/src/water_energy_balance.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/water_under_ice.c -o vic/vic_run/src/water_under_ice.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/write_layer.c -o vic/vic_run/src/write_layer.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/vic_run/src/write_vegvar.c -o vic/vic_run/src/write_vegvar.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/agg_data.c -o vic/drivers/shared_all/src/agg_data.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/alarms.c -o vic/drivers/shared_all/src/alarms.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/calc_root_fraction.c -o vic/drivers/shared_all/src/calc_root_fraction.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/cmd_proc.c -o vic/drivers/shared_all/src/cmd_proc.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/compress_files.c -o vic/drivers/shared_all/src/compress_files.o
vic/drivers/shared_all/src/compress_files.c: In function ‘compress_files’:
vic/drivers/shared_all/src/compress_files.c:49:9: warning: unused variable ‘status’ [-Wunused-variable]
49 | int status = system(command);
| ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/compute_derived_state_vars.c -o vic/drivers/shared_all/src/compute_derived_state_vars.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/compute_lake_params.c -o vic/drivers/shared_all/src/compute_lake_params.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/compute_treeline.c -o vic/drivers/shared_all/src/compute_treeline.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/forcing_utils.c -o vic/drivers/shared_all/src/forcing_utils.o
vic/drivers/shared_all/src/forcing_utils.c: In function ‘count_force_vars’:
vic/drivers/shared_all/src/forcing_utils.c:134:19: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
134 | char* status;
| ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/free_all_vars.c -o vic/drivers/shared_all/src/free_all_vars.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/free_vegcon.c -o vic/drivers/shared_all/src/free_vegcon.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/generate_default_lake_state.c -o vic/drivers/shared_all/src/generate_default_lake_state.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/generate_default_state.c -o vic/drivers/shared_all/src/generate_default_state.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/get_parameters.c -o vic/drivers/shared_all/src/get_parameters.o
vic/drivers/shared_all/src/get_parameters.c: In function ‘get_parameters’:
vic/drivers/shared_all/src/get_parameters.c:37:30: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
37 | char* status;
| ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/history_metadata.c -o vic/drivers/shared_all/src/history_metadata.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/initialize_energy.c -o vic/drivers/shared_all/src/initialize_energy.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/initialize_global.c -o vic/drivers/shared_all/src/initialize_global.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/initialize_options.c -o vic/drivers/shared_all/src/initialize_options.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/initialize_parameters.c -o vic/drivers/shared_all/src/initialize_parameters.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/initialize_snow.c -o vic/drivers/shared_all/src/initialize_snow.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/initialize_soil.c -o vic/drivers/shared_all/src/initialize_soil.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/initialize_veg.c -o vic/drivers/shared_all/src/initialize_veg.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/input_tools.c -o vic/drivers/shared_all/src/input_tools.o
vic/drivers/shared_all/src/input_tools.c: In function ‘count_nstreams_nvars’:
vic/drivers/shared_all/src/input_tools.c:67:19: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
67 | char* status;
| ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/make_all_vars.c -o vic/drivers/shared_all/src/make_all_vars.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/make_cell_data.c -o vic/drivers/shared_all/src/make_cell_data.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/make_dmy.c -o vic/drivers/shared_all/src/make_dmy.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/make_energy_bal.c -o vic/drivers/shared_all/src/make_energy_bal.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/make_snow_data.c -o vic/drivers/shared_all/src/make_snow_data.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/make_veg_var.c -o vic/drivers/shared_all/src/make_veg_var.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/open_file.c -o vic/drivers/shared_all/src/open_file.o
vic/drivers/shared_all/src/open_file.c: In function ‘open_file’:
vic/drivers/shared_all/src/open_file.c:58:11: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
58 | char* status;
| ^~~~~~
vic/drivers/shared_all/src/open_file.c:56:11: warning: unused variable ‘command’ [-Wunused-variable]
56 | command[MAXSTRING],
| ^~~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/print_library_shared.c -o vic/drivers/shared_all/src/print_library_shared.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/put_data.c -o vic/drivers/shared_all/src/put_data.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/set_output_defaults.c -o vic/drivers/shared_all/src/set_output_defaults.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/soil_moisture_from_water_table.c -o vic/drivers/shared_all/src/soil_moisture_from_water_table.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/timing.c -o vic/drivers/shared_all/src/timing.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/update_step_vars.c -o vic/drivers/shared_all/src/update_step_vars.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/vic_history.c -o vic/drivers/shared_all/src/vic_history.o
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/vic_log.c -o vic/drivers/shared_all/src/vic_log.o
vic/drivers/shared_all/src/vic_log.c: In function ‘finalize_logging’:
vic/drivers/shared_all/src/vic_log.c:47:18: warning: unused variable ‘LOG_DEST’ [-Wunused-variable]
47 | extern FILE *LOG_DEST;
| ^~~~~~~~
vic/drivers/shared_all/src/vic_log.c: In function ‘get_logname’:
vic/drivers/shared_all/src/vic_log.c:93:11: warning: unused variable ‘prefix’ [-Wunused-variable]
93 | char *prefix = "vic.log.";
| ^~~~~~
vic/drivers/shared_all/src/vic_log.c:92:11: warning: unused variable ‘ext’ [-Wunused-variable]
92 | char *ext = ".txt";
| ^~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/vic_time.c -o vic/drivers/shared_all/src/vic_time.o
vic/drivers/shared_all/src/vic_time.c: In function ‘julian_day_from_dmy’:
vic/drivers/shared_all/src/vic_time.c:131:8: warning: ‘B’ may be used uninitialized [-Wmaybe-uninitialized]
131 | jd += B;
| ^~
vic/drivers/shared_all/src/vic_time.c:81:15: note: ‘B’ was declared here
81 | int A, B;
| ^
vic/drivers/shared_all/src/vic_time.c: In function ‘date2num’:
vic/drivers/shared_all/src/vic_time.c:553:16: warning: ‘jdelta’ may be used uninitialized [-Wmaybe-uninitialized]
553 | jdelta = jdelta + tzoffset / HOURS_PER_DAY;
vic/drivers/shared_all/src/vic_time.c:513:12: note: ‘jdelta’ was declared here
513 | double jdelta;
| ^~~~~~
vic/drivers/shared_all/src/vic_time.c: In function ‘dmy_julian_day’:
vic/drivers/shared_all/src/vic_time.c:281:7: warning: ‘A’ may be used uninitialized [-Wmaybe-uninitialized]
281 | B = A + 1524;
| ~~^~~~~~~~~~
vic/drivers/shared_all/src/vic_time.c:247:12: note: ‘A’ was declared here
247 | int A, B, C, D, E;
| ^
vic/drivers/shared_all/src/vic_time.c: In function ‘num2date’:
vic/drivers/shared_all/src/vic_time.c:593:17: warning: ‘jdelta’ may be used uninitialized [-Wmaybe-uninitialized]
593 | jd = jdelta + origin + small_offset;
| ~~~~~~~^~~~~~~~
vic/drivers/shared_all/src/vic_time.c:574:16: note: ‘jdelta’ was declared here
574 | double jd, jdelta;
| ^~~~~~
gcc-14 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O2 -Wall -Wstrict-prototypes -pedantic -mtune=native -c vic/drivers/shared_all/src/zero_output_list.c -o vic/drivers/shared_all/src/zero_output_list.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c conv.cpp -o conv.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c display_current_settings.cpp -o display_current_settings.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c force.cpp -o force.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c get_options.cpp -o get_options.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c globals.cpp -o globals.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c initiate.cpp -o initiate.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c make_output_info.cpp -o make_output_info.o
make_output_info.cpp: In function ‘Rcpp::List make_output_tables(Rcpp::List)’:
make_output_info.cpp:216:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
216 | for (int k = 0; k < out_metadata[varid].nelem; k++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
make_output_info.cpp: In function ‘void write_data(stream_struct**, dmy_struct*, Rcpp::List&, Rcpp::IntegerVector&)’:
make_output_info.cpp:257:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
257 | for (int v = 0; v < (*streams)[sn].nvars; v++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~
make_output_info.cpp:260:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
260 | for (int e = 0; e < out_metadata[varid].nelem; e++) {
| ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c make_params.cpp -o make_params.o
make_params.cpp: In function ‘void make_soilparam(Rcpp::NumericVector, soil_con_struct*, veg_lib_struct*)’:
make_params.cpp:10:8: warning: variable ‘run_cell’ set but not used [-Wunused-but-set-variable]
10 | bool run_cell;
| ^~~~~~~~
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c vic_run_cell.cpp -o vic_run_cell.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c vic_version.cpp -o vic_version.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c vic_run_cells_all.cpp -o vic_run_cells_all.o
g++-14 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-gcc/Work/build/include" -DNDEBUG -I "./vic/vic_run/include" -I "./vic/drivers/shared_all/include" -I "." -DLOG_LVL=25 -D_DEFAULT_SOURCE -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/RcppArmadillo/include' -I'/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fopenmp -fpic -g -O2 -Wall -pedantic -mtune=native -DR_NO_REMAP -c XAJ.cpp -o XAJ.o
g++-14 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -Wl,-O1 -o VIC5.so vic/vic_run/src/advected_sensible_heat.o vic/vic_run/src/alloc_and_free.o vic/vic_run/src/arno_evap.o vic/vic_run/src/calc_atmos_energy_bal.o vic/vic_run/src/calc_gridcell_avg_albedo.o vic/vic_run/src/calc_Nscale_factors.o vic/vic_run/src/calc_rainonly.o vic/vic_run/src/calc_snow_coverage.o vic/vic_run/src/calc_surf_energy_bal.o vic/vic_run/src/calc_veg_params.o vic/vic_run/src/CalcAerodynamic.o vic/vic_run/src/CalcBlowingSnow.o vic/vic_run/src/canopy_assimilation.o vic/vic_run/src/canopy_evap.o vic/vic_run/src/comparisons.o vic/vic_run/src/compute_coszen.o vic/vic_run/src/compute_derived_lake_dimensions.o vic/vic_run/src/compute_pot_evap.o vic/vic_run/src/compute_soil_resp.o vic/vic_run/src/compute_zwt.o vic/vic_run/src/correct_precip.o vic/vic_run/src/estimate_T1.o vic/vic_run/src/faparl.o vic/vic_run/src/frozen_soil.o vic/vic_run/src/func_atmos_energy_bal.o vic/vic_run/src/func_atmos_moist_bal.o vic/vic_run/src/func_canopy_energy_bal.o vic/vic_run/src/func_surf_energy_bal.o vic/vic_run/src/ice_melt.o vic/vic_run/src/IceEnergyBalance.o vic/vic_run/src/initialize_lake.o vic/vic_run/src/interpoloation.o vic/vic_run/src/lake_utils.o vic/vic_run/src/lakes.eb.o vic/vic_run/src/latent_heat_from_snow.o vic/vic_run/src/massrelease.o vic/vic_run/src/newt_raph_func_fast.o vic/vic_run/src/penman.o vic/vic_run/src/photosynth.o vic/vic_run/src/physics.o vic/vic_run/src/prepare_full_energy.o vic/vic_run/src/root_brent.o vic/vic_run/src/runoff.o vic/vic_run/src/snow_intercept.o vic/vic_run/src/snow_melt.o vic/vic_run/src/snow_utility.o vic/vic_run/src/SnowPackEnergyBalance.o vic/vic_run/src/soil_carbon_balance.o vic/vic_run/src/soil_conduction.o vic/vic_run/src/soil_thermal_eqn.o vic/vic_run/src/solve_snow.o vic/vic_run/src/StabilityCorrection.o vic/vic_run/src/surface_fluxes.o vic/vic_run/src/svp.o vic/vic_run/src/vic_run.o vic/vic_run/src/water_energy_balance.o vic/vic_run/src/water_under_ice.o vic/vic_run/src/write_layer.o vic/vic_run/src/write_vegvar.o vic/drivers/shared_all/src/agg_data.o vic/drivers/shared_all/src/alarms.o vic/drivers/shared_all/src/calc_root_fraction.o vic/drivers/shared_all/src/cmd_proc.o vic/drivers/shared_all/src/compress_files.o vic/drivers/shared_all/src/compute_derived_state_vars.o vic/drivers/shared_all/src/compute_lake_params.o vic/drivers/shared_all/src/compute_treeline.o vic/drivers/shared_all/src/forcing_utils.o vic/drivers/shared_all/src/free_all_vars.o vic/drivers/shared_all/src/free_vegcon.o vic/drivers/shared_all/src/generate_default_lake_state.o vic/drivers/shared_all/src/generate_default_state.o vic/drivers/shared_all/src/get_parameters.o vic/drivers/shared_all/src/history_metadata.o vic/drivers/shared_all/src/initialize_energy.o vic/drivers/shared_all/src/initialize_global.o vic/drivers/shared_all/src/initialize_options.o vic/drivers/shared_all/src/initialize_parameters.o vic/drivers/shared_all/src/initialize_snow.o vic/drivers/shared_all/src/initialize_soil.o vic/drivers/shared_all/src/initialize_veg.o vic/drivers/shared_all/src/input_tools.o vic/drivers/shared_all/src/make_all_vars.o vic/drivers/shared_all/src/make_cell_data.o vic/drivers/shared_all/src/make_dmy.o vic/drivers/shared_all/src/make_energy_bal.o vic/drivers/shared_all/src/make_snow_data.o vic/drivers/shared_all/src/make_veg_var.o vic/drivers/shared_all/src/open_file.o vic/drivers/shared_all/src/print_library_shared.o vic/drivers/shared_all/src/put_data.o vic/drivers/shared_all/src/set_output_defaults.o vic/drivers/shared_all/src/soil_moisture_from_water_table.o vic/drivers/shared_all/src/timing.o vic/drivers/shared_all/src/update_step_vars.o vic/drivers/shared_all/src/vic_history.o vic/drivers/shared_all/src/vic_log.o vic/drivers/shared_all/src/vic_time.o vic/drivers/shared_all/src/zero_output_list.o ./conv.o ./display_current_settings.o ./force.o ./get_options.o ./globals.o ./initiate.o ./make_output_info.o ./make_params.o ./RcppExports.o ./vic_run_cell.o ./vic_version.o vic_run_cells_all.o XAJ.o -fopenmp -llapack -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lRblas -lgfortran -lm -lquadmath -L/home/hornik/tmp/R.check/r-devel-gcc/Work/build/lib -lR
make[1]: Leaving directory '/tmp/Rtmp6cnLFb/R.INSTALL253e407f1639fe/VIC5/src'
make[1]: Entering directory '/tmp/Rtmp6cnLFb/R.INSTALL253e407f1639fe/VIC5/src'
make[1]: Leaving directory '/tmp/Rtmp6cnLFb/R.INSTALL253e407f1639fe/VIC5/src'
installing to /home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/00LOCK-VIC5/00new/VIC5/libs
** R
** data
*** moving datasets to lazyload DB
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (VIC5)