* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/SimBIID.Rcheck’
* using R Under development (unstable) (2025-02-25 r87824)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘SimBIID/DESCRIPTION’ ... OK
* this is package ‘SimBIID’ version ‘0.2.1’
* package encoding: UTF-8
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘SimBIID’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/SimBIID-00install.html' for details.
* used C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’
* checking C++ specification ... NOTE
  Specified C++11: please drop specification unless essential
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [1s/2s] OK
* checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the package can be unloaded cleanly ... [1s/1s] OK
* checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
* checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
* checking loading without being on the library search path ... [1s/1s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [10s/14s] OK
* checking Rd files ... [0s/1s] NOTE
checkRd: (-1) ABCSMC.Rd:81-84: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:85-88: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:89-92: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:93-95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:96-97: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:99: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:104: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) ABCSMC.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:68: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PMCMC.Rd:69: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PMCMC.Rd:70: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PMCMC.Rd:71: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PMCMC.Rd:72: Lost braces in \itemize; meant \describe ?
checkRd: (-1) PMCMC.Rd:92-94: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:95: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:100: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:101: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:102: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:104: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:105: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:106: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:107: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) PMCMC.Rd:108: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:78: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:79: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:80: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) mparseRcpp.Rd:81: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) run.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) run.Rd:46-49: Lost braces in \itemize; \value handles \item{}{} directly
checkRd: (-1) run.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  window.PMCMC.Rd: window.mcmc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [0s/0s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking compilation flags in Makevars ... OK
* checking for GNU extensions in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking use of PKG_*FLAGS in Makefiles ... OK
* checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
* checking pragmas in C/C++ headers and code ... OK
* checking compilation flags used ... OK
* checking compiled code ... OK
* checking examples ... [1s/1s] OK
* checking for unstated dependencies in ‘tests’ ... OK
* checking tests ... [23s/31s] OK
  Running ‘testthat.R’ [23s/31s]
* checking PDF version of manual ... [4s/5s] OK
* checking HTML version of manual ... [1s/1s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 3 NOTEs