- using R Under development (unstable) (2025-02-26 r87830)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-14 (Debian 14.2.0-16) 14.2.0
GNU Fortran (Debian 14.2.0-16) 14.2.0
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘R2BayesX/DESCRIPTION’ ... OK
- this is package ‘R2BayesX’ version ‘1.1-5’
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking serialization versions ... OK
- checking whether package ‘R2BayesX’ can be installed ... OK
See the install log for details.
- used C compiler: ‘gcc-14 (Debian 14.2.0-16) 14.2.0’
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/2s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/2s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [25s/31s] OK
- checking Rd files ... [1s/1s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking line endings in C/C++/Fortran sources/headers ... OK
- checking pragmas in C/C++ headers and code ... OK
- checking compilation flags used ... OK
- checking compiled code ... OK
- checking examples ... [2s/3s] ERROR
Running examples in ‘R2BayesX-Ex.R’ failed
The error most likely occurred in:
> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
> ### Name: fitted.bayesx
> ### Title: Extract BayesX Fitted Values and Residuals
> ### Aliases: fitted.bayesx residuals.bayesx
> ### Keywords: regression
>
> ### ** Examples
>
> ## Not run:
> ##D ## generate some data
> ##D set.seed(121)
> ##D n <- 500
> ##D
> ##D ## regressors
> ##D dat <- data.frame(x = runif(n, -3, 3), z = runif(n, 0, 1),
> ##D w = runif(n, 0, 3))
> ##D
> ##D ## generate response
> ##D dat$y <- with(dat, 1.5 + sin(x) + z -3 * w + rnorm(n, sd = 0.6))
> ##D
> ##D ## estimate model
> ##D b1 <- bayesx(y ~ sx(x) + z + w, data = dat)
> ##D
> ##D ## extract fitted values
> ##D fit <- fitted(b1)
> ##D hist(fit, freq = FALSE)
> ##D
> ##D ## now extract 1st model term
> ##D ## and plot it
> ##D fx <- fitted(b1, term = "sx(x)")
> ##D plot(fx)
> ##D
> ##D ## extract model residuals
> ##D hist(residuals(b1))
> ##D
> ##D ## extract partial residuals for sx(x)
> ##D pres <- residuals(b1, term = "sx(x)")
> ##D plot(fx, ylim = range(pres[, 2]))
> ##D points(pres)
> ## End(Not run)
>
> ## now another example with
> ## use of read.bayesx.output
> ## load example data from
> ## package R2BayesX
> dir <- file.path(find.package("R2BayesX"), "examples", "ex01")
> b2 <- read.bayesx.output(dir)
Error in strsplit(x, as.character(split), fixed, perl, useBytes) :
NA in coercion to Rboolean
Calls: read.bayesx.output -> search.bayesx.models -> strsplit
Execution halted
- checking for unstated dependencies in ‘demo’ ... OK
- checking PDF version of manual ... [7s/9s] OK
- checking HTML version of manual ... [2s/4s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR