• using R Under development (unstable) (2025-01-16 r87584)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-12) 14.2.0     GNU Fortran (Debian 14.2.0-12) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘ProtE/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘ProtE’ version ‘1.0.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘ProtE’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [8s/9s] OK
• checking whether the package can be loaded with stated dependencies ... [8s/10s] OK
• checking whether the package can be unloaded cleanly ... [8s/9s] OK
• checking whether the namespace can be loaded with stated dependencies ... [7s/9s] OK
• checking whether the namespace can be unloaded cleanly ... [8s/9s] OK
• checking loading without being on the library search path ... [8s/10s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [41s/51s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [8s/10s] ERROR Running examples in ‘ProtE-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: dianno > ### Title: DIA NN proteomics data analysis > ### Aliases: dianno > > ### ** Examples > > #Example of running the function with paths for two groups. > # The file path is a placeholder, replace it with an actual file. > > jittered.pg_matrix.tsv <- system.file("extdata", "report.pg_matrix.tsv", package = "ProtE") > dianno(file = jittered.pg_matrix.tsv, + group_names = c("Healthy","Control"), + samples_per_group = c(5,5), filtering_value = 80) The ProtE process starts now! Error in grid.newpage() :   could not open file '/home/hornik/tmp/R.check/r-devel-gcc/Work/build/Packages/ProtE/extdata/ProtE_Analysis/Plots/meanSdPlot.bmp' Calls: dianno Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [2s/3s] OK
• checking PDF version of manual ... [4s/5s] OK
• checking HTML version of manual ... [0s/0s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR