• using R Under development (unstable) (2025-12-19 r89206)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-15 (Debian 15.2.0-11) 15.2.0     GNU Fortran (Debian 15.2.0-11) 15.2.0
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘PiC/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘PiC’ version ‘1.2.7’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘PiC’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [1s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/12s] OK
• checking Rd files ... [0s/0s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [2s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [37s/37s] ERROR   Running ‘testthat.R’ [37s/36s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > # This file is part of the standard setup for testthat.   > # It is recommended that you do not modify it.   > #   > # Where should you do additional test configuration?   > # Learn more about the roles of various files in:   > # * https://r-pkgs.org/testing-design.html#sec-tests-files-overview   > # * https://testthat.r-lib.org/articles/special-files.html   >   > library(testthat)   > library(withr)   > library(PiC)   >   > test_check("PiC")      Attaching package: 'data.table'      The following object is masked from 'package:base':          %notin%      Joining with `by = join_by(u, v)`   Joining with `by = join_by(cls)`   Joining with `by = join_by(u, v, w)`   Joining with `by = join_by(u, v, w)`   Joining with `by = join_by(u, v, w)`   Joining with `by = join_by(u, v, w)`   File Forest_floor:/tmp/RtmpglombK/test_forest/Forest_floor.txt      File AGB:/tmp/RtmpglombK/test_forest/AGB.txt      Forest Floor segmentation: 2.449 sec elapsed   Percorso del file Forest_floor: /tmp/RtmpglombK/test_forest/Forest_floor.txt   Percorso del file AGB: /tmp/RtmpglombK/test_forest/AGB.txt   Stage 1: Forest floor segmentation   Forest floor saved to: /tmp/RtmpglombK/test_forest_seg/test_forest_dim3_th1_Forest_floor_soil_dim_0.1.txt   Stage 2: Wood segmentation   Wood points saved to: /tmp/RtmpglombK/test_forest_seg/test_forest_dim3_th1_Wood_eps2_mpts6.txt   Stage 3: Separating foliage from wood   Foliage points saved to: /tmp/RtmpglombK/test_forest_seg/test_forest_dim3_th1_AGBnoWOOD_eps2_mpts6.txt   Stage 4: Calculating tree metrics and canopy analysis   Calculating individual tree coordinates...   Calculating tree heights...   Saving _problems/test-Forest_seg-100.R   ========================================   SegOne v4.1.1: Single Tree Analysis   Robust error handling + Adaptive density threshold   ========================================      --- Analysis Parameters ---   Input points: 251,363   Voxel size: 2 cm (0.02 m)   DBSCAN parameters: eps = 2, minPts = 6   Minimum cluster size: 200 voxels   Shape parameter threshold: 30   Output directory: /tmp/RtmpglombK/file18edd8fba5a04      Stage 1/4: Wood segmentation     Voxelizing point cloud...       Voxels generated: 151,781       Running DBSCAN clustering...       Clusters found: 2 (>200 voxels)       Applying PCA shape filter (R > 30)...       Wood clusters accepted: 1 / 1       Mean shape parameter R: 113.68     Wood points identified: 192,870     Wood clusters detected: 1     Wood file saved: test_tree_dim2_th1_Wood_eps2_mpts6.txt      Stage 2/4: Foliage separation     Performing voxel-based subtraction...     Voxelizing at 0.2 m resolution...     Performing voxel-based subtraction...     Foliage points identified: 56,301     Wood/foliage ratio: 3.43      Stage 3/4: Metrics calculation skipped (calculate_metrics = FALSE)      Stage 4/4: Analysis completed successfully   Total time: 2.079 sec elapsed      ========================================   Output Files Generated:   1. Wood points: test_tree_dim2_th1_Wood_eps2_mpts6.txt      -> 192,870 points   2. Foliage points: test_tree_dim2_th1_AGBnoWOOD_eps2_mpts6.txt      -> 56,301 points   ========================================      Voxelizing time: 0.004 sec elapsed   [ FAIL 1 | WARN 2 | SKIP 7 | PASS 35 ]      ══ Skipped tests (7) ═══════════════════════════════════════════════════════════   • Could not find shiny app file: global.R (5): 'test-shiny-app.r:32:3',     'test-shiny-app.r:70:3', 'test-shiny-app.r:85:3', 'test-shiny-app.r:96:3',     'test-shiny-app.r:116:3'   • Could not find shiny app file: server.R (1): 'test-shiny-app.r:201:3'   • Could not find shiny app file: ui.R (1): 'test-shiny-app.r:221:3'      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Failure ('test-Forest_seg.R:88:3'): Forest_seg funziona correttamente con una scena forestale realistica ──   Expected `Forest_seg(...)` not to throw any errors.   Actually got a <simpleError> with message:     attempt access index 3/3 in VECTOR_ELT      [ FAIL 1 | WARN 2 | SKIP 7 | PASS 35 ]   Error:   ! Test failures.   Execution halted
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR