• using R Under development (unstable) (2024-11-18 r87347)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘NetRep/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘NetRep’ version ‘1.2.7’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘NetRep’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘g++-14 (Debian 14.2.0-8) 14.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/13s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) modulePreservation.Rd:155-157: Lost braces in \itemize; meant \describe ? checkRd: (-1) modulePreservation.Rd:158-161: Lost braces in \itemize; meant \describe ? checkRd: (-1) modulePreservation.Rd:162-165: Lost braces in \itemize; meant \describe ? checkRd: (-1) modulePreservation.Rd:166-169: Lost braces in \itemize; meant \describe ? checkRd: (-1) modulePreservation.Rd:170-173: Lost braces in \itemize; meant \describe ? checkRd: (-1) modulePreservation.Rd:174-177: Lost braces in \itemize; meant \describe ? checkRd: (-1) modulePreservation.Rd:178-183: Lost braces in \itemize; meant \describe ? checkRd: (-1) modulePreservation.Rd:92-96: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) modulePreservation.Rd:97-103: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) modulePreservation.Rd:104-108: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) modulePreservation.Rd:109-112: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) modulePreservation.Rd:113-118: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) modulePreservation.Rd:119-125: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) networkProperties.Rd:123-125: Lost braces in \itemize; meant \describe ? checkRd: (-1) networkProperties.Rd:126-129: Lost braces in \itemize; meant \describe ? checkRd: (-1) networkProperties.Rd:130-133: Lost braces in \itemize; meant \describe ? checkRd: (-1) networkProperties.Rd:134-137: Lost braces in \itemize; meant \describe ? checkRd: (-1) networkProperties.Rd:138-141: Lost braces in \itemize; meant \describe ? checkRd: (-1) networkProperties.Rd:142-145: Lost braces in \itemize; meant \describe ? checkRd: (-1) networkProperties.Rd:146-151: Lost braces in \itemize; meant \describe ? checkRd: (-1) networkProperties.Rd:69-72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) networkProperties.Rd:73-75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) networkProperties.Rd:80-84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) networkProperties.Rd:85-88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) networkProperties.Rd:89-92: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) nodeOrder.Rd:115-117: Lost braces in \itemize; meant \describe ? checkRd: (-1) nodeOrder.Rd:118-121: Lost braces in \itemize; meant \describe ? checkRd: (-1) nodeOrder.Rd:122-125: Lost braces in \itemize; meant \describe ? checkRd: (-1) nodeOrder.Rd:126-129: Lost braces in \itemize; meant \describe ? checkRd: (-1) nodeOrder.Rd:130-133: Lost braces in \itemize; meant \describe ? checkRd: (-1) nodeOrder.Rd:134-137: Lost braces in \itemize; meant \describe ? checkRd: (-1) nodeOrder.Rd:138-143: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:223-225: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:226-229: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:230-233: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:234-237: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:238-241: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:242-245: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:246-251: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:354-355: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:356-360: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:361-362: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:368-369: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:370-371: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:372-374: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:375-377: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:378-379: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:380-381: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:382-383: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:384-385: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:386-387: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:388-389: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:399-400: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:401-403: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotModule.Rd:404-406: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:388-390: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:391-394: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:395-398: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:399-402: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:403-406: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:407-410: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:411-416: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:519-520: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:521-525: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:526-527: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:533-534: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:535-536: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:537-539: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:540-542: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:543-544: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:545-546: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:547-548: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:549-550: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:551-552: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:553-554: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:564-565: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:566-568: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:569-571: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:576: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotTopology.Rd:577-578: Lost braces in \itemize; meant \describe ? checkRd: (-1) sampleOrder.Rd:100-102: Lost braces in \itemize; meant \describe ? checkRd: (-1) sampleOrder.Rd:103-106: Lost braces in \itemize; meant \describe ? checkRd: (-1) sampleOrder.Rd:107-110: Lost braces in \itemize; meant \describe ? checkRd: (-1) sampleOrder.Rd:111-114: Lost braces in \itemize; meant \describe ? checkRd: (-1) sampleOrder.Rd:115-118: Lost braces in \itemize; meant \describe ? checkRd: (-1) sampleOrder.Rd:119-122: Lost braces in \itemize; meant \describe ? checkRd: (-1) sampleOrder.Rd:123-128: Lost braces in \itemize; meant \describe ?
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   permutationTest.Rd: statmod Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking data for ASCII and uncompressed saves ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [13s/17s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/8s] OK   Running ‘testthat.R’ [4s/8s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [32s/32s] OK
• checking PDF version of manual ... [5s/6s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs