* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck’ * using R Under development (unstable) (2025-02-26 r87830) * using platform: x86_64-pc-linux-gnu * R was compiled by gcc-14 (Debian 14.2.0-16) 14.2.0 GNU Fortran (Debian 14.2.0-16) 14.2.0 * running under: Debian GNU/Linux trixie/sid * using session charset: UTF-8 * checking for file ‘MatchIt/DESCRIPTION’ ... OK * this is package ‘MatchIt’ version ‘4.7.0’ * package encoding: UTF-8 * checking package namespace information ... OK * checking package dependencies ... INFO Package suggested but not available for checking: ‘gurobi’ * checking if this is a source package ... OK * checking if there is a namespace ... OK * checking for executable files ... OK * checking for hidden files and directories ... OK * checking for portable file names ... OK * checking for sufficient/correct file permissions ... OK * checking whether package ‘MatchIt’ can be installed ... OK See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/MatchIt-00install.html' for details. * used C++ compiler: ‘g++-14 (Debian 14.2.0-16) 14.2.0’ * checking package directory ... OK * checking for future file timestamps ... OK * checking ‘build’ directory ... OK * checking DESCRIPTION meta-information ... OK * checking top-level files ... OK * checking for left-over files ... OK * checking index information ... OK * checking package subdirectories ... OK * checking code files for non-ASCII characters ... OK * checking R files for syntax errors ... OK * checking whether the package can be loaded ... [0s/0s] OK * checking whether the package can be loaded with stated dependencies ... [0s/0s] OK * checking whether the package can be unloaded cleanly ... [0s/0s] OK * checking whether the namespace can be loaded with stated dependencies ... [0s/1s] OK * checking whether the namespace can be unloaded cleanly ... [0s/0s] OK * checking loading without being on the library search path ... [0s/0s] OK * checking whether startup messages can be suppressed ... [0s/0s] OK * checking use of S3 registration ... OK * checking dependencies in R code ... OK * checking S3 generic/method consistency ... OK * checking replacement functions ... OK * checking foreign function calls ... OK * checking R code for possible problems ... [14s/17s] OK * checking Rd files ... [3s/4s] OK * checking Rd metadata ... OK * checking Rd line widths ... OK * checking Rd cross-references ... OK * checking for missing documentation entries ... OK * checking for code/documentation mismatches ... OK * checking Rd \usage sections ... OK * checking Rd contents ... OK * checking for unstated dependencies in examples ... OK * checking contents of ‘data’ directory ... OK * checking data for non-ASCII characters ... [0s/0s] OK * checking LazyData ... OK * checking data for ASCII and uncompressed saves ... OK * checking line endings in C/C++/Fortran sources/headers ... OK * checking line endings in Makefiles ... OK * checking compilation flags in Makevars ... OK * checking for GNU extensions in Makefiles ... OK * checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK * checking use of PKG_*FLAGS in Makefiles ... OK * checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK * checking pragmas in C/C++ headers and code ... OK * checking compilation flags used ... OK * checking compiled code ... OK * checking installed files from ‘inst/doc’ ... OK * checking files in ‘vignettes’ ... OK * checking examples ... [12s/14s] OK Examples with CPU (user + system) or elapsed time > 5s user system elapsed method_genetic 4.358 0.064 5.584 * checking for unstated dependencies in vignettes ... OK * checking package vignettes ... OK * checking re-building of vignette outputs ... [42s/53s] ERROR Error(s) in re-building vignettes: ... --- re-building ‘MatchIt.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/MatchIt_files/figure-html/unnamed-chunk-7-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 22466 bytes Input file size = 23348 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 21471 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 21266 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 21266 Output IDAT size = 21266 bytes (1200 bytes decrease) Output file size = 21344 bytes (2004 bytes = 8.58% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/MatchIt_files/figure-html/unnamed-chunk-8-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15009 bytes Input file size = 15879 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13283 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13283 Output IDAT size = 13283 bytes (1726 bytes decrease) Output file size = 13361 bytes (2518 bytes = 15.86% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/MatchIt_files/figure-html/unnamed-chunk-12-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11875 bytes Input file size = 12745 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10969 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10917 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 10917 Output IDAT size = 10917 bytes (958 bytes decrease) Output file size = 10995 bytes (1750 bytes = 13.73% decrease) --- finished re-building ‘MatchIt.Rmd’ --- re-building ‘assessing-balance.Rmd’ using rmarkdown_notangle ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-3-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 16116 bytes Input file size = 16986 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 15057 zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 14959 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 1 f = 0 IDAT size = 14959 Output IDAT size = 14959 bytes (1157 bytes decrease) Output file size = 15037 bytes (1949 bytes = 11.47% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-4-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 25707 bytes Input file size = 26601 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23847 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 23847 Output IDAT size = 23847 bytes (1860 bytes decrease) Output file size = 23925 bytes (2676 bytes = 10.06% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-5-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 11711 bytes Input file size = 12581 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10316 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 10316 Output IDAT size = 10316 bytes (1395 bytes decrease) Output file size = 10394 bytes (2187 bytes = 17.38% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-6-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15764 bytes Input file size = 16634 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14081 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14081 Output IDAT size = 14081 bytes (1683 bytes decrease) Output file size = 14159 bytes (2475 bytes = 14.88% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-10-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 12085 bytes Input file size = 12955 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11143 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 11143 Output IDAT size = 11143 bytes (942 bytes decrease) Output file size = 11221 bytes (1734 bytes = 13.38% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-11-1.png 672x480 pixels, 8 bits/pixel, 256 colors in palette Reducing image to 8 bits/pixel, grayscale Input IDAT size = 15048 bytes Input file size = 15918 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13389 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 13389 Output IDAT size = 13389 bytes (1659 bytes decrease) Output file size = 13467 bytes (2451 bytes = 15.40% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-16-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 21541 bytes Input file size = 21643 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17992 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17992 Output IDAT size = 17992 bytes (3549 bytes decrease) Output file size = 18070 bytes (3573 bytes = 16.51% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-17-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 36003 bytes Input file size = 36129 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29147 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 29147 Output IDAT size = 29147 bytes (6856 bytes decrease) Output file size = 29225 bytes (6904 bytes = 19.11% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-18-1.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 42559 bytes Input file size = 42697 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 41098 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39372 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 39372 Output IDAT size = 39372 bytes (3187 bytes decrease) Output file size = 39450 bytes (3247 bytes = 7.60% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-18-2.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 16255 bytes Input file size = 16345 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 14961 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14609 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 5 IDAT size = 14609 Output IDAT size = 14609 bytes (1646 bytes decrease) Output file size = 14687 bytes (1658 bytes = 10.14% decrease) ** Processing: /home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MatchIt.Rcheck/vign_test/MatchIt/vignettes/assessing-balance_files/figure-html/unnamed-chunk-18-3.png 672x480 pixels, 3x8 bits/pixel, RGB Input IDAT size = 20311 bytes Input file size = 20413 bytes Trying: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17425 zc = 9 zm = 8 zs = 1 f = 0 zc = 1 zm = 8 zs = 2 f = 0 zc = 9 zm = 8 zs = 3 f = 0 zc = 9 zm = 8 zs = 0 f = 5 zc = 9 zm = 8 zs = 1 f = 5 zc = 1 zm = 8 zs = 2 f = 5 zc = 9 zm = 8 zs = 3 f = 5 Selecting parameters: zc = 9 zm = 8 zs = 0 f = 0 IDAT size = 17425 Output IDAT size = 17425 bytes (2886 bytes decrease) Output file size = 17503 bytes (2910 bytes = 14.26% decrease) --- finished re-building ‘assessing-balance.Rmd’ --- re-building ‘estimating-effects.Rmd’ using rmarkdown_notangle Quitting from lines 583-589 [unnamed-chunk-23] (estimating-effects.Rmd) Error: processing vignette 'estimating-effects.Rmd' failed with diagnostics: Assertion failed. One of the following must apply: * checkmate::check_character(hypothesis): Must comply to pattern '=' * checkmate::check_numeric(hypothesis): Must be of type 'numeric', not 'character' * checkmate::check_formula(hypothesis): Must be a formula, not character * checkmate::check_matrix(hypothesis): Must be of type 'matrix', not 'character' * checkmate::check_function(hypothesis): Must be a function, not 'character' * checkmate::check_null(hypothesis): Must be NULL --- failed re-building ‘estimating-effects.Rmd’ --- re-building ‘matching-methods.Rmd’ using rmarkdown_notangle --- finished re-building ‘matching-methods.Rmd’ --- re-building ‘sampling-weights.Rmd’ using rmarkdown_notangle --- finished re-building ‘sampling-weights.Rmd’ SUMMARY: processing the following file failed: ‘estimating-effects.Rmd’ Error: Vignette re-building failed. Execution halted * checking PDF version of manual ... [9s/13s] OK * checking HTML version of manual ... [2s/3s] OK * checking for non-standard things in the check directory ... OK * DONE Status: 1 ERROR