- using R Under development (unstable) (2025-12-23 r89222)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
gcc-15 (Debian 15.2.0-11) 15.2.0
GNU Fortran (Debian 15.2.0-11) 15.2.0
- running under: Debian GNU/Linux forky/sid
- using session charset: UTF-8
- checking for file ‘Markovchart/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘Markovchart’ version ‘2.1.5’
- package encoding: UTF-8
- checking CRAN incoming feasibility ... [1s/1s] NOTE
Maintainer: ‘Balazs Dobi <dobibalazs@inf.elte.hu>’
No Authors@R field in DESCRIPTION.
Please add one, modifying
Authors@R: c(person(given = c("Balazs", "Dobi", "&", "Andras"),
family = "Zempleni",
role = "aut"),
person(given = "Balazs",
family = "Dobi",
role = "cre",
email = "dobibalazs@inf.elte.hu"))
as necessary.
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘Markovchart’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [1s/2s] OK
- checking whether the package can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the package can be unloaded cleanly ... [1s/1s] OK
- checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
- checking whether the namespace can be unloaded cleanly ... [1s/2s] OK
- checking loading without being on the library search path ... [1s/1s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [9s/12s] OK
- checking Rd files ... [0s/0s] NOTE
checkRd: (-1) Markovchart.Rd:154: Lost braces
154 | If either \code{h} or \code{k} have length greater than 1, then the \code{G-value} (weighted average of average cost and cost standard deviation) is calculated for all given values without optimisation. The value of the function in this case is a data frame of class code{Markov_grid} with \code{length(h)*length(k)} number of rows and three columns for \code{h}, \code{k} and the \code{G-value}.
| ^
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [0s/0s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [3s/7s] OK
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [3s/14s] ERROR
Error(s) in re-building vignettes:
...
--- re-building ‘Applications.Rmd’ using rmarkdown
Time between samplings (h)
1 55.7
Critical value (k)
1 0.158
Expected cost
1 0.43
Cost sd due to process var.
1 0.5
Quitting from Applications.Rmd:90-110 [app_LDL_cost_plot]
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
<error/rlang_error>
Error in `geom_text_contour()`:
! Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
---
Backtrace:
▆
1. ├─base::withVisible(knit_print(x, ...))
2. ├─knitr::knit_print(x, ...)
3. └─knitr:::knit_print.default(x, ...)
4. └─knitr::normal_print(x)
5. ├─base::print(x)
6. └─ggplot2 (local) `print.ggplot2::ggplot`(x)
7. ├─ggplot2::ggplot_gtable(data)
8. └─ggplot2 (local) `ggplot_gtable.ggplot2::ggplot_built`(data)
9. └─ggplot2:::by_layer(...)
10. ├─rlang::try_fetch(...)
11. │ ├─base::tryCatch(...)
12. │ │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)
13. │ │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])
14. │ │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)
15. │ └─base::withCallingHandlers(...)
16. └─ggplot2 (local) f(l = layers[[i]], d = data[[i]])
17. └─l$draw_geom(d, layout)
18. └─ggplot2 (local) draw_geom(..., self = self)
19. └─self$geom$draw_layer(...)
20. └─ggplot2 (local) draw_layer(..., self = self)
21. └─base::lapply(...)
22. └─ggplot2 (local) FUN(X[[i]], ...)
23. ├─rlang::inject(self$draw_panel(data, panel_params, coord, !!!params))
24. └─self$draw_panel(...)
25. └─metR (local) draw_panel(...)
26. ├─data[, `:=`(N, .N), by = .(group, piece)]
27. └─data.table:::`[.data.table`(...)
~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Error: processing vignette 'Applications.Rmd' failed with diagnostics:
Problem while converting geom to grob.
ℹ Error occurred in the 3rd layer.
Caused by error in `[.data.table`:
! attempt access index 18/18 in VECTOR_ELT
--- failed re-building ‘Applications.Rmd’
SUMMARY: processing the following file failed:
‘Applications.Rmd’
Error: Vignette re-building failed.
Execution halted
- checking PDF version of manual ... [4s/5s] OK
- checking HTML version of manual ... [1s/1s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR, 2 NOTEs