* using log directory ‘/home/hornik/tmp/R.check/r-devel-gcc/Work/PKGS/MRPC.Rcheck’
* using R Under development (unstable) (2025-02-26 r87830)
* using platform: x86_64-pc-linux-gnu
* R was compiled by
    gcc-14 (Debian 14.2.0-16) 14.2.0
    GNU Fortran (Debian 14.2.0-16) 14.2.0
* running under: Debian GNU/Linux trixie/sid
* using session charset: UTF-8
* checking for file ‘MRPC/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘MRPC’ version ‘3.1.0’
* checking package namespace information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking if there is a namespace ... OK
* checking for executable files ... OK
* checking for hidden files and directories ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking whether package ‘MRPC’ can be installed ... OK
See 'https://www.r-project.org/nosvn/R.check/r-devel-linux-x86_64-debian-gcc/MRPC-00install.html' for details.
* checking package directory ... OK
* checking for future file timestamps ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking for left-over files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking code files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... [8s/10s] OK
* checking whether the package can be loaded with stated dependencies ... [8s/10s] OK
* checking whether the package can be unloaded cleanly ... [7s/8s] OK
* checking whether the namespace can be loaded with stated dependencies ... [7s/7s] OK
* checking whether the namespace can be unloaded cleanly ... [7s/9s] OK
* checking loading without being on the library search path ... [7s/8s] OK
* checking use of S3 registration ... OK
* checking dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... [39s/47s] OK
* checking Rd files ... [0s/1s] OK
* checking Rd metadata ... OK
* checking Rd line widths ... OK
* checking Rd cross-references ... NOTE
Found the following Rd file(s) with Rd \link{} targets missing package
anchors:
  CompareMethodsNodeOrdering.Rd: pc, pc.stable, mmpc, mmhc, hc
  CompareMethodsVStructure.Rd: pc, pc.stable, mmpc, mmhc, hc
  CutModules.Rd: cut2
  EdgeOrientation.Rd: graph-class
  MRPC.Rd: pc, ci.test, gaussCItest, graph-class
  MRPCclass.Rd: pcAlgo-class, skeleton, pc, graph-class
  ModiSkeleton.Rd: skeleton, pc, ci.test, graph-class
  PlotDendrogram.Rd: plotDendroAndColors
  PlotGraphWithModules.Rd: ggnet2
  data_with_outliers.Rd: pc, pc.stable, mmpc, mmhc, hc
  data_without_outliers.Rd: pc, pc.stable, mmpc, mmhc, hc
Please provide package anchors for all Rd \link{} targets not in the
package itself and the base packages.
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking contents of ‘data’ directory ... OK
* checking data for non-ASCII characters ... [1s/1s] OK
* checking LazyData ... OK
* checking data for ASCII and uncompressed saves ... OK
* checking examples ... [9s/12s] OK
* checking PDF version of manual ... [5s/6s] OK
* checking HTML version of manual ... [1s/2s] OK
* checking for non-standard things in the check directory ... OK
* DONE
Status: 1 NOTE