• using R Under development (unstable) (2024-11-18 r87347)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘FunctanSNP/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘FunctanSNP’ version ‘0.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘FunctanSNP’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [4s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/4s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/4s] OK
• checking whether the namespace can be unloaded cleanly ... [3s/5s] OK
• checking loading without being on the library search path ... [3s/5s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [17s/23s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) SNPcvinter.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPcvinter.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPcvinter.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPcvinter.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPcvinter.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:63: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:66: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPcvinter.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPgvf.Rd:20: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPgvf.Rd:21: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPgvf.Rd:22: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPgvf.Rd:23: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPinter.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPinter.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPinter.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPinter.Rd:35: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPinter.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPinter.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPinter.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPinter.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPinter.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPinter.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPinter.Rd:59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPlm.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPlm.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPlm.Rd:34: Lost braces in \itemize; meant \describe ? checkRd: (-1) SNPlm.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) SNPlm.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) coefSNPreg.Rd:15: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) coefSNPreg.Rd:16: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) coefSNPreg.Rd:17: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) coefSNPreg.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) plotGVF.Rd:36: Lost braces in \itemize; meant \describe ? checkRd: (-1) plotGVF.Rd:37: Lost braces in \itemize; meant \describe ? checkRd: (-1) predictSNPreg.Rd:18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData1.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData1.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData1.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData1.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData1.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData2.Rd:19: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData2.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData2.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData2.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simData2.Rd:23: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simX.Rd:21: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) simX.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [8s/10s] OK
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [0s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE