• using R Under development (unstable) (2024-12-28 r87474)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     gcc-14 (Debian 14.2.0-8) 14.2.0     GNU Fortran (Debian 14.2.0-8) 14.2.0
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘DiceOptim/DESCRIPTION’ ... OK
• this is package ‘DiceOptim’ version ‘2.1.1’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘DiceOptim’ can be installed ... OK See the install log for details.
• used C compiler: ‘gcc-14 (Debian 14.2.0-8) 14.2.0’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/0s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/0s] OK
• checking loading without being on the library search path ... [0s/0s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [14s/18s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) EGO.cst.Rd:71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EGO.cst.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EGO.cst.Rd:73: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EGO.cst.Rd:74: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EGO.cst.Rd:75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EGO.cst.Rd:76: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) EGO.cst.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) crit_AL.Rd:28: Lost braces in \itemize; meant \describe ? checkRd: (-1) crit_AL.Rd:29: Lost braces in \itemize; meant \describe ? checkRd: (-1) crit_AL.Rd:30: Lost braces in \itemize; meant \describe ? checkRd: (-1) crit_AL.Rd:31: Lost braces in \itemize; meant \describe ? checkRd: (-1) crit_AL.Rd:32: Lost braces in \itemize; meant \describe ? checkRd: (-1) crit_AL.Rd:33: Lost braces in \itemize; meant \describe ? checkRd: (-1) critcst_optimizer.Rd:48: Lost braces in \itemize; meant \describe ? checkRd: (-1) critcst_optimizer.Rd:49: Lost braces in \itemize; meant \describe ? checkRd: (-1) easyEGO.Rd:60: Lost braces     60 | \item \code{trace}{: between -1 and 3}        | ^ checkRd: (-1) easyEGO.Rd:61: Lost braces     61 | \item \code{seed}{: to fix the seed of the run}        | ^ checkRd: (-1) easyEGO.Rd:62: Lost braces     62 | \item \code{cov.reestim}{: Boolean, if TRUE (default) the covariance parameters are re-estimated at each iteration}        | ^ checkRd: (-1) easyEGO.Rd:63: Lost braces     63 | \item \code{model.trend}{: trend for the GP model}        | ^ checkRd: (-1) easyEGO.Rd:64: Lost braces     64 | \item \code{lb, ub}{: lower and upper bounds for the GP covariance ranges}        | ^ checkRd: (-1) easyEGO.Rd:65: Lost braces     65 | \item \code{nugget}{: optional nugget effect}        | ^ checkRd: (-1) easyEGO.Rd:66: Lost braces     66 | \item \code{covtype}{: covariance of the GP model (default "matern5_2")}        | ^ checkRd: (-1) easyEGO.Rd:67: Lost braces     67 | \item \code{optim.method}{: optimisation of the GP hyperparameters (default "BFGS")}        | ^ checkRd: (-1) easyEGO.Rd:68: Lost braces     68 | \item \code{multistart}{: number of restarts of BFGS}        | ^ checkRd: (-1) easyEGO.Rd:69: Lost braces     69 | \item \code{gpmean.trick, gpmean.freq}{: Boolean and integer, resp., for the gpmean trick}        | ^ checkRd: (-1) easyEGO.Rd:70: Lost braces     70 | \item \code{scaling}{: Boolean, activates input scaling}        | ^ checkRd: (-1) easyEGO.Rd:71: Lost braces     71 | \item \code{warping}{: Boolean, activates output warping}        | ^ checkRd: (-1) easyEGO.Rd:72: Lost braces     72 | \item \code{TR}{: Boolean, activates TREGO instead of EGO}        | ^ checkRd: (-1) easyEGO.Rd:73: Lost braces     73 | \item \code{trcontrol}{: list of parameters of the trust region, see \code{\link[DiceOptim]{TREGO.nsteps}}}        | ^ checkRd: (-1) easyEGO.Rd:74: Lost braces     74 | \item \code{always.sample}{: Boolean, activates force observation even if it leads to poor conditioning}        | ^ checkRd: (-1) easyEGO.Rd:43: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) easyEGO.Rd:44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) easyEGO.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) easyEGO.Rd:46: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) easyEGO.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) easyEGO.Rd:48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) easyEGO.cst.Rd:74-75: Lost braces     74 | \item \code{method}{: choice of constrained improvement function: "\code{AL}", "\code{EFI}" or "\code{SUR}"        | ^ checkRd: (-1) easyEGO.cst.Rd:76: Lost braces     76 | \item \code{trace}{: if positive, tracing information on the progress of the optimization is produced.}        | ^ checkRd: (-1) easyEGO.cst.Rd:77-78: Lost braces     77 | \item \code{inneroptim}{: choice of the inner optimization algorithm: "\code{genoud}" or "\code{random}"        | ^ checkRd: (-1) easyEGO.cst.Rd:79: Lost braces     79 | \item \code{maxit}{: maximum number of iterations of the inner loop. }        | ^ checkRd: (-1) easyEGO.cst.Rd:80: Lost braces     80 | \item \code{seed}{: to fix the random variable generator}        | ^ checkRd: (-1) easyEGO.cst.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) easyEGO.cst.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) easyEGO.cst.Rd:56-57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) integration_design_cst.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) integration_design_cst.Rd:62-63: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   max_qEI.Rd: genoud   qEGO.nsteps.Rd: genoud   sampleFromEI.Rd: km Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking examples ... [12s/14s] OK
• checking PDF version of manual ... [7s/9s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs