• using R Under development (unstable) (2024-11-20 r87352)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.3 (2)     Debian flang-new version 19.1.3 (2)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘virtualspecies/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘virtualspecies’ version ‘1.6’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘virtualspecies’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [9s/11s] OK
• checking whether the package can be loaded with stated dependencies ... [9s/10s] OK
• checking whether the package can be unloaded cleanly ... [9s/10s] OK
• checking whether the namespace can be loaded with stated dependencies ... [9s/11s] OK
• checking whether the namespace can be unloaded cleanly ... [9s/11s] OK
• checking loading without being on the library search path ... [9s/12s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [46s/58s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   virtualspecies-package.Rd: terra, ade4, rnaturalearth Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking examples ... [36s/43s] OK Examples with CPU (user + system) or elapsed time > 5s                    user system elapsed convertToPA 6.681 0.160 8.649 generateSpFromPCA 4.559 0.106 5.109
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [197s/233s] OK   Running ‘tests.R’ [197s/233s]
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [2s/4s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE