• using R Under development (unstable) (2024-11-13 r87330)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.3 (1)     Debian flang-new version 19.1.3 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘umx/DESCRIPTION’ ... OK
• this is package ‘umx’ version ‘4.20.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘umx’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [3s/4s] OK
• checking whether the package can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the package can be unloaded cleanly ... [3s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [3s/3s] OK
• checking whether the namespace can be unloaded cleanly ... [4s/4s] OK
• checking loading without being on the library search path ... [4s/4s] OK
• checking whether startup messages can be suppressed ... [4s/4s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [80s/96s] OK
• checking Rd files ... [5s/6s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   RMSEA.MxModel.Rd: mxModel   RMSEA.summary.mxmodel.Rd: mxModel   extractAIC.MxModel.Rd: mxModel   plot.MxLISRELModel.Rd: mxModel   plot.MxModel.Rd: DiagrammeR, mxModel   residuals.MxModel.Rd: mxModel   tmx_is.identified.Rd: mxCheckIdentification   umx-deprecated.Rd: mxEvalByName, mxTryHard   umxACE.Rd: mxModel   umxACEcov.Rd: mxModel   umxACEv.Rd: mxModel   umxAPA.Rd: lme   umxAlgebra.Rd: mxAlgebra   umxBrownie.Rd: omxBrownie   umxCI.Rd: mxModel, mxCI   umxCI_boot.Rd: mxModel   umxCLPM.Rd: mxModel   umxCP.Rd: mxModel   umxCompare.Rd: mxModel, mxCompare   umxConfint.Rd: mxModel, mxCI, mxRun   umxDiagnose.Rd: mxModel   umxDoC.Rd: mxModel   umxEFA.Rd: mxModel, mxFactorScores   umxEquate.Rd: mxModel   umxExpCov.Rd: mxModel   umxExpMeans.Rd: mxModel   umxFactor.Rd: mxFactor   umxFactorScores.Rd: mxFactorScores   umxFitIndices.Rd: mxModel, summary.MxModel   umxFixAll.Rd: mxModel   umxGetParameters.Rd: omxGetParameters, mxModel   umxGxE.Rd: mxModel   umxGxEbiv.Rd: mxModel   umxIP.Rd: mxModel   umxJiggle.Rd: mxMatrix   umxMI.Rd: mxModel, mxMI   umxMRDoC.Rd: mxModel   umxMatrix.Rd: mxMatrix   umxMatrixFree.Rd: mxMatrix   umxModel.Rd: mxModel   umxModelNames.Rd: mxModel, mxRename   umxModify.Rd: mxModel, mxRun   umxParameters.Rd: mxModel   umxPath.Rd: mxPath   umxPlotACE.Rd: mxModel   umxPlotACEcov.Rd: mxModel   umxPlotCP.Rd: mxModel   umxPlotSexLim.Rd: mxModel   umxRAM.Rd: mxData, mxModel   umxReduce.Rd: mxModel   umxReduceACE.Rd: mxModel   umxRun.Rd: mxRun, mxModel, mxData   umxSetParameters.Rd: mxModel, omxAssignFirstParameters   umxSexLim.Rd: mxModel   umxSimplex.Rd: mxModel   umxSummary.MxModel.Rd: mxModel, mxCheckIdentification   umxSummary.Rd: mxModel   umxSummaryACE.Rd: mxModel   umxSummaryACEcov.Rd: mxModel   umxSummaryACEv.Rd: mxModel   umxSummaryCP.Rd: mxModel   umxSummaryDoC.Rd: mxModel   umxSummaryGxE.Rd: mxModel   umxSummaryGxEbiv.Rd: mxModel   umxSummaryIP.Rd: mxModel   umxSummarySexLim.Rd: mxModel   umxSummarySimplex.Rd: mxModel   umxSuperModel.Rd: mxFitFunctionMultigroup, mxModel   umxTwoStage.Rd: mxModel   umxUnexplainedCausalNexus.Rd: mxCheckIdentification, mxCompare   umxVersion.Rd: mxModel   umx_cont_2_quantiles.Rd: mxFactor   umx_has_CIs.Rd: mxModel   umx_has_been_run.Rd: mxModel   umx_has_means.Rd: mxModel   umx_is_MxMatrix.Rd: mxMatrix   umx_is_MxModel.Rd: mxModel   umx_is_RAM.Rd: mxModel   umx_is_endogenous.Rd: mxModel   umx_is_exogenous.Rd: mxModel   umx_is_ordered.Rd: mxData   umx_rot.Rd: mxModel   umx_round.Rd: mxModel   umx_standardize.Rd: mxModel   umx_string_to_algebra.Rd: mxAlgebra   umx_time.Rd: mxModel   umx_var.Rd: mxModel   xmuLabel.Rd: mxModel, mxPath, mxMatrix, omxSetParameters   xmuLabel_MATRIX_Model.Rd: mxModel   xmuLabel_Matrix.Rd: mxMatrix   xmuLabel_RAM_Model.Rd: mxModel   xmuMI.Rd: mxModel   xmuPropagateLabels.Rd: mxModel   xmuRAM2Ordinal.Rd: mxModel   xmuValues.Rd: mxModel, mxMatrix   xmu_CI_stash.Rd: mxModel   xmu_DF_to_mxData_TypeCov.Rd: mxData   xmu_cell_is_on.Rd: mxModel   xmu_check_needs_means.Rd: mxData   xmu_describe_data_WLS.Rd: mxFitFunctionWLS,     omxAugmentDataWithWLSSummary   xmu_dot_maker.Rd: mxModel   xmu_extract_column.Rd: mxData   xmu_get_CI.Rd: mxModel   xmu_make_TwinSuperModel.Rd: mxModel   xmu_make_mxData.Rd: mxData   xmu_safe_run_summary.Rd: mxModel, mxTryHard   xmu_show_fit_or_comparison.Rd: mxModel   xmu_standardize_RAM.Rd: mxModel Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking contents of ‘data’ directory ... OK
• checking data for non-ASCII characters ... [0s/0s] OK
• checking LazyData ... OK
• checking data for ASCII and uncompressed saves ... OK
• checking examples ... [19s/27s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [486s/587s] OK   Running ‘testthat.R’ [485s/587s]
• checking PDF version of manual ... [36s/48s] OK
• checking HTML version of manual ... [24s/38s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE