• using R Under development (unstable) (2025-02-19 r87757)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (1+b1)     Debian flang-new version 19.1.7 (1+b1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘tram/DESCRIPTION’ ... OK
• this is package ‘tram’ version ‘1.2-0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking whether package ‘tram’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [22s/27s] OK
• checking Rd files ... [1s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [38s/46s] OK Examples with CPU (user + system) or elapsed time > 5s               user system elapsed tram-methods 7.776 0.031 9.147 mmlt 7.228 0.074 8.563 perm_test 5.849 0.047 6.983 Coxph 5.465 0.308 6.898 mtram 4.539 0.051 5.850
• checking for unstated dependencies in ‘demo’ ... NOTE '::' or ':::' imports not declared from:   ‘eha’ ‘flexsurv’ ‘frailtyEM’ ‘frailtypack’ ‘gamlss.cens’ ‘icenReg’   ‘mpr’ ‘rms’ ‘rstpm2’ ‘timereg’ 'library' or 'require' calls not declared from:   ‘cotram’ ‘gamlss.cens’ ‘latex2exp’ ‘mpr’ ‘tramvs’ 'data(package=)' calls not declared from:   ‘AER’ ‘KONPsurv’ ‘gamlss.data’
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [322s/429s] OK   Running ‘Coxph-Ex.R’ [13s/16s]   Comparing ‘Coxph-Ex.Rout’ to ‘Coxph-Ex.Rout.save’ ... OK   Running ‘KaplanMeier-Ex.R’ [3s/4s]   Running ‘PI_OVL-Ex.R’ [4s/5s]   Running ‘Polr-Ex.R’ [2s/3s]   Comparing ‘Polr-Ex.Rout’ to ‘Polr-Ex.Rout.save’ ... OK   Running ‘Survreg-Ex.R’ [5s/6s]   Comparing ‘Survreg-Ex.Rout’ to ‘Survreg-Ex.Rout.save’ ... OK   Running ‘bugfixes.R’ [64s/79s]   Running ‘intercepts-Ex.R’ [4s/6s]   Comparing ‘intercepts-Ex.Rout’ to ‘intercepts-Ex.Rout.save’ ... OK   Running ‘mmlt-Ex.R’ [154s/213s]   Comparing ‘mmlt-Ex.Rout’ to ‘mmlt-Ex.Rout.save’ ... OK   Running ‘mmlt-interface.R’ [47s/63s]   Running ‘mtram-Ex.R’ [14s/18s]   Comparing ‘mtram-Ex.Rout’ to ‘mtram-Ex.Rout.save’ ... OK   Running ‘stram-Ex.R’ [13s/16s]   Comparing ‘stram-Ex.Rout’ to ‘stram-Ex.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [8m/11m] OK
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [2s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE