• using R Under development (unstable) (2025-12-21 r89216)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘surveysd/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘surveysd’ version ‘2.0.0’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [1s/2s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘surveysd’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘Debian clang version 21.1.7 (1)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/3s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/3s] OK
• checking whether the package can be unloaded cleanly ... [2s/3s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/3s] OK
• checking loading without being on the library search path ... [2s/2s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [22s/28s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... NOTE File ‘surveysd/libs/surveysd.so’:   Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
• checking sizes of PDF files under ‘inst/doc’ ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [2s/3s] ERROR Running examples in ‘surveysd-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: calc.stError > ### Title: Calcualte point estimates and their standard errors using > ### bootstrap weights. > ### Aliases: calc.stError > ### Keywords: manip survey > > ### ** Examples > > # Import data and calibrate > > library(surveysd) > library(data.table) Attaching package: ‘data.table’ The following object is masked from ‘package:base’:     %notin% > setDTthreads(1) > set.seed(1234) > eusilc <- demo.eusilc(n = 4,prettyNames = TRUE) Error in `[.data.table`(eusilc, , `:=`(povmd60, as.numeric(eqIncome < :   attempt access index 29/29 in VECTOR_ELT Calls: demo.eusilc -> [ -> [.data.table Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [14s/9s] ERROR   Running ‘testthat.R’ [14s/9s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(surveysd)   >   >   > test_check("surveysd")   Saving _problems/test_calcstError-11.R   Saving _problems/test_drawbootstrap-10.R   Saving _problems/test_generateHHID-10.R   Saving _problems/test_ipf-4.R   Saving _problems/test_plot-11.R   Saving _problems/test_recalib-10.R   Saving _problems/test_rescaledbootstrap-12.R   [ FAIL 7 | WARN 0 | SKIP 1 | PASS 0 ]      ══ Skipped tests (1) ═══════════════════════════════════════════════════════════   • empty test (1):      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test_calcstError.R:11:1'): (code run outside of `test_that()`) ──────   Error in ``[.data.table`(eusilc, , `:=`(povmd60, as.numeric(eqIncome < 0.6 * laeken::weightedMedian(eqIncome, w = db090))), by = year)`: attempt access index 29/29 in VECTOR_ELT   Backtrace:       ▆    1. └─surveysd:::demo.eusilc() at test_calcstError.R:11:1    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Error ('test_drawbootstrap.R:10:1'): (code run outside of `test_that()`) ────   Error in ``[.data.table`(eusilc, , `:=`(povmd60, as.numeric(eqIncome < 0.6 * laeken::weightedMedian(eqIncome, w = db090))), by = year)`: attempt access index 29/29 in VECTOR_ELT   Backtrace:       ▆    1. └─surveysd:::demo.eusilc(n = 3) at test_drawbootstrap.R:10:1    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Error ('test_generateHHID.R:10:1'): (code run outside of `test_that()`) ─────   Error in ``[.data.table`(eusilc, , `:=`(povmd60, as.numeric(eqIncome < 0.6 * laeken::weightedMedian(eqIncome, w = db090))), by = year)`: attempt access index 29/29 in VECTOR_ELT   Backtrace:       ▆    1. └─surveysd:::demo.eusilc() at test_generateHHID.R:10:1    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Error ('test_ipf.R:4:1'): (code run outside of `test_that()`) ───────────────   Error in ``[.data.table`(eusilc, , `:=`(povmd60, as.numeric(eqIncome < 0.6 * laeken::weightedMedian(eqIncome, w = db090))), by = year)`: attempt access index 29/29 in VECTOR_ELT   Backtrace:       ▆    1. └─surveysd::demo.eusilc(n = 1, prettyNames = TRUE) at test_ipf.R:4:1    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Error ('test_plot.R:11:1'): (code run outside of `test_that()`) ─────────────   Error in ``[.data.table`(eusilc, , `:=`(povmd60, as.numeric(eqIncome < 0.6 * laeken::weightedMedian(eqIncome, w = db090))), by = year)`: attempt access index 29/29 in VECTOR_ELT   Backtrace:       ▆    1. └─surveysd:::demo.eusilc() at test_plot.R:11:1    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Error ('test_recalib.R:10:1'): (code run outside of `test_that()`) ──────────   Error in ``[.data.table`(eusilc, , `:=`(povmd60, as.numeric(eqIncome < 0.6 * laeken::weightedMedian(eqIncome, w = db090))), by = year)`: attempt access index 29/29 in VECTOR_ELT   Backtrace:       ▆    1. └─surveysd:::demo.eusilc(n = 4) at test_recalib.R:10:1    2. ├─...[]    3. └─data.table:::`[.data.table`(...)   ── Error ('test_rescaledbootstrap.R:12:1'): (code run outside of `test_that()`) ──   Error in ``[.data.table`(eusilc, , `:=`(N.households, sum(db090[!duplicated(db030)])), by = db040)`: attempt access index 28/28 in VECTOR_ELT   Backtrace:       ▆    1. ├─...[] at test_rescaledbootstrap.R:12:1    2. └─data.table:::`[.data.table`(...) at test_rescaledbootstrap.R:12:1      [ FAIL 7 | WARN 0 | SKIP 1 | PASS 0 ]   Error:   ! Test failures.   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [15s/16s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘error_estimation.Rmd’ using rmarkdown Quitting from error_estimation.Rmd:31-44 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 29/29 in VECTOR_ELT --- Backtrace:     ▆  1. └─surveysd::demo.eusilc(prettyNames = TRUE)  2. ├─...[]  3. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'error_estimation.Rmd' failed with diagnostics: attempt access index 29/29 in VECTOR_ELT --- failed re-building ‘error_estimation.Rmd’ --- re-building ‘ipf.Rmd’ using rmarkdown Quitting from ipf.Rmd:30-36 [setup] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 29/29 in VECTOR_ELT --- Backtrace:     ▆  1. └─surveysd::demo.eusilc(1, prettyNames = TRUE)  2. ├─...[]  3. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'ipf.Rmd' failed with diagnostics: attempt access index 29/29 in VECTOR_ELT --- failed re-building ‘ipf.Rmd’ --- re-building ‘methodology.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘methodology.Rmd’ --- re-building ‘raowu.Rmd’ using rmarkdown [WARNING] Deprecated: --highlight-style. Use --syntax-highlighting instead. --- finished re-building ‘raowu.Rmd’ --- re-building ‘surveysd.Rmd’ using rmarkdown Quitting from surveysd.Rmd:26-33 [unnamed-chunk-1] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 29/29 in VECTOR_ELT --- Backtrace:     ▆  1. └─surveysd::demo.eusilc(n = 2, prettyNames = TRUE)  2. ├─...[]  3. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'surveysd.Rmd' failed with diagnostics: attempt access index 29/29 in VECTOR_ELT --- failed re-building ‘surveysd.Rmd’ SUMMARY: processing the following files failed:   ‘error_estimation.Rmd’ ‘ipf.Rmd’ ‘surveysd.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [5s/8s] OK
• checking HTML version of manual ... [3s/5s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 3 ERRORs, 1 NOTE