* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘stan4bart’ ...
** package ‘stan4bart’ successfully unpacked and MD5 sums checked
** using staged installation
checking whether the C++ compiler works... yes
checking for C++ compiler default output file name... a.out
checking for suffix of executables...
checking whether we are cross compiling... no
checking for suffix of object files... o
checking whether the compiler supports GNU C++... yes
checking whether clang++-19 -std=gnu++17 accepts -g... yes
checking for clang++-19 -std=gnu++17 option to enable C++11 features... none needed
checking how to run the C++ preprocessor... clang++-19 -std=gnu++17 -E
checking whether the compiler supports GNU C++... (cached) yes
checking whether clang++-19 -std=gnu++17 accepts -g... (cached) yes
checking for clang++-19 -std=gnu++17 option to enable C++11 features... (cached) none needed
checking build system type... x86_64-pc-linux-gnu
checking host system type... x86_64-pc-linux-gnu
checking for gcc... clang-19
checking whether the compiler supports GNU C... yes
checking whether clang-19 accepts -g... yes
checking for clang-19 option to enable C11 features... none needed
checking for x86 cpuid output... unknown
checking for x86-AVX xgetbv output... unknown
checking for x86 cpuid 0x00000000 output... 14:756e6547:6c65746e:49656e69
checking for x86 cpuid 0x00000001 output... 406f1:19200800:7ffefbff:bfebfbff
checking whether SSE2 is supported by the processor... yes
checking whether SSE2 is supported by the processor and OS... yes
checking whether C++ compiler accepts -msse2... yes
checking for stdio.h... yes
checking for stdlib.h... yes
checking for string.h... yes
checking for inttypes.h... yes
checking for stdint.h... yes
checking for strings.h... yes
checking for sys/stat.h... yes
checking for sys/types.h... yes
checking for unistd.h... yes
checking for malloc.h... yes
checking size of size_t... 8
checking alignment of void*... 8
checking for size_t... yes
checking for working alloca.h... yes
checking for alloca... yes
checking for working posix_memalign... yes
checking for ffs... yes
configure: creating ./config.status
config.status: creating src/Makevars
config.status: creating src/config.h
** libs
using C compiler: ‘Debian clang version 19.1.5 (1)’
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcmMWLK/R.INSTALL1e4b774580867f/stan4bart/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c bart_util.cpp -o bart_util.o
In file included from bart_util.cpp:1:
In file included from ./bart_util.hpp:4:
include/ext/Rinternals.h:30:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
30 | #define R_NO_REMAP
| ^
<command line>:7:9: note: previous definition is here
7 | #define R_NO_REMAP 1
| ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c init.cpp -o init.o
In file included from init.cpp:1:
include/ext/Rinternals.h:30:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
30 | #define R_NO_REMAP
| ^
<command line>:7:9: note: previous definition is here
7 | #define R_NO_REMAP 1
| ^
1 warning generated.
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c misc_adaptiveRadixTree.c -o misc_adaptiveRadixTree.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c misc_string.c -o misc_string.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rc_bounds.c -o rc_bounds.o
clang-19 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -fpic -g -O3 -Wall -pedantic -c rc_util.c -o rc_util.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I"include" -I"include/sundials" -I"../inst/include" -DBOOST_DISABLE_ASSERTS -DEIGEN_NO_DEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppEigen/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/dbarts/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/include' -D_REENTRANT -DSTAN_THREADS -fpic -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c stan_sampler.cpp -o stan_sampler.o
In file included from stan_sampler.cpp:1:
In file included from ./stan_sampler.hpp:4:
include/ext/Rinternals.h:30:9: warning: 'R_NO_REMAP' macro redefined [-Wmacro-redefined]
30 | #define R_NO_REMAP
| ^
<command line>:7:9: note: previous definition is here
7 | #define R_NO_REMAP 1
| ^
1 warning generated.
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o stan4bart.so bart_util.o init.o misc_adaptiveRadixTree.o misc_string.o rc_bounds.o rc_util.o stan_sampler.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/lib/ -Wl,-rpath,/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/RcppParallel/lib/ -ltbb -ltbbmalloc -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcmMWLK/R.INSTALL1e4b774580867f/stan4bart/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpcmMWLK/R.INSTALL1e4b774580867f/stan4bart/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpcmMWLK/R.INSTALL1e4b774580867f/stan4bart/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-stan4bart/00new/stan4bart/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (stan4bart)