• using R Under development (unstable) (2025-02-26 r87830)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.7 (1+b1)     Debian flang-new version 19.1.7 (1+b1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘spectralGraphTopology/DESCRIPTION’ ... OK
• this is package ‘spectralGraphTopology’ version ‘0.2.3’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘spectralGraphTopology’ can be installed ... OK See the install log for details.
• used C++ compiler: ‘Debian clang version 19.1.7 (1+b1)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [0s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the package can be unloaded cleanly ... [0s/0s] OK
• checking whether the namespace can be loaded with stated dependencies ... [0s/0s] OK
• checking whether the namespace can be unloaded cleanly ... [0s/1s] OK
• checking loading without being on the library search path ... [0s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [8s/11s] OK
• checking Rd files ... [0s/1s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [6s/10s] ERROR Running examples in ‘spectralGraphTopology-Ex.R’ failed The error most likely occurred in: > base::assign(".ptime", proc.time(), pos = "CheckExEnv") > ### Name: learn_k_component_graph > ### Title: Learn the Laplacian matrix of a k-component graph Learns a > ### k-component graph on the basis of an observed data matrix. Check out > ### https://mirca.github.io/spectralGraphTopology for code examples. > ### Aliases: learn_k_component_graph > > ### ** Examples > > # design true Laplacian > Laplacian <- rbind(c(1, -1, 0, 0), + c(-1, 1, 0, 0), + c(0, 0, 1, -1), + c(0, 0, -1, 1)) > n <- ncol(Laplacian) > # sample data from multivariate Gaussian > Y <- MASS::mvrnorm(n * 500, rep(0, n), MASS::ginv(Laplacian)) > # estimate graph on the basis of sampled data > graph <- learn_k_component_graph(cov(Y), k = 2, beta = 10) Error in max(werr/(w + w0), na.rm = "ignore") :   NA in coercion to Rboolean Calls: learn_k_component_graph ... <Anonymous> -> pb_tick -> assert_named_or_empty_list -> stopifnot Execution halted
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [5s/7s] ERROR   Running ‘testthat.R’ [5s/7s] Running the tests in ‘tests/testthat.R’ failed. Complete output:   > library(testthat)   > library(spectralGraphTopology)      Attaching package: 'spectralGraphTopology'      The following object is masked from 'package:stats':          D      >   > test_check("spectralGraphTopology")   [ FAIL 4 | WARN 0 | SKIP 0 | PASS 40 ]      ══ Failed tests ════════════════════════════════════════════════════════════════   ── Error ('test-learnGraphTopology.R:14:3'): learn_k_component_graph with single component random graph ──   Error in `max(werr/(w + w0), na.rm = "ignore")`: NA in coercion to Rboolean   Backtrace:       ▆    1. └─spectralGraphTopology::learn_k_component_graph(...) at test-learnGraphTopology.R:14:3    2. └─pb$tick(...)    3. └─progress:::pb_tick(self, private, len, tokens)    4. └─progress:::assert_named_or_empty_list(tokens)    5. └─base::stopifnot(length(x) == 0 || !is.null(names(x)))   ── Error ('test-learnGraphTopology.R:21:1'): (code run outside of `test_that()`) ──   <purrr_error_indexed/rlang_error/error/condition>   Error in `purrr::pmap(all_pars, build_and_run_test, desc = desc_stub, code = captured,       .interpret_glue = .interpret_glue)`: ℹ In index: 1.   Caused by error:   ! Failed to parse glue component   Caused by error in `parse()`:   ! <text>:1:1: unexpected ','   1: ,       ^   ── Error ('test-learnSmoothSignalGraph.R:9:1'): (code run outside of `test_that()`) ──   <purrr_error_indexed/rlang_error/error/condition>   Error in `purrr::pmap(all_pars, build_and_run_test, desc = desc_stub, code = captured,       .interpret_glue = .interpret_glue)`: ℹ In index: 1.   Caused by error:   ! Failed to parse glue component   Caused by error in `parse()`:   ! <text>:1:1: unexpected ','   1: ,       ^   ── Error ('test-operators.R:122:1'): (code run outside of `test_that()`) ───────   <purrr_error_indexed/rlang_error/error/condition>   Error in `purrr::pmap(all_pars, build_and_run_test, desc = desc_stub, code = captured,       .interpret_glue = .interpret_glue)`: ℹ In index: 1.   Caused by error:   ! Failed to parse glue component   Caused by error in `parse()`:   ! <text>:1:1: unexpected ','   1: ,       ^      [ FAIL 4 | WARN 0 | SKIP 0 | PASS 40 ]   Error: Test failures   Execution halted
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [4s/5s] OK
• checking PDF version of manual ... [6s/8s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 ERRORs