• using R Under development (unstable) (2024-12-21 r87453)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.5 (1)     Debian flang-new version 19.1.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘smoothROCtime/DESCRIPTION’ ... OK
• checking extension type ... Package
• this is package ‘smoothROCtime’ version ‘0.1.0’
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘smoothROCtime’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [2s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the package can be unloaded cleanly ... [2s/2s] OK
• checking whether the namespace can be loaded with stated dependencies ... [2s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [2s/2s] OK
• checking loading without being on the library search path ... [2s/3s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [10s/12s] OK
• checking Rd files ... [0s/1s] NOTE checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup?     14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.}        | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup?     14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.}        | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup?     14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.}        | ^ checkRd: (-1) funcen.Rd:14: Lost braces; missing escapes or markup?     14 | \item{bw}{method for computing the bandwidth matrix. Most of the methods included in the \code{\link{kde}} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.}        | ^ checkRd: (-1) smoothROCtime-package.Rd:12: Lost braces     12 | \item \code{\link{funcen}}: {Bivariate kernel density estimation of the joint density function of the \eqn{(marker, time-to-event)} variable.}        | ^ checkRd: (-1) smoothROCtime-package.Rd:13: Lost braces; missing escapes or markup?     13 | \item \code{\link{stRoc}}: {Smooth estimations for Cumulative/Dynamic and Incident/Dynamic ROC curves.}        | ^ checkRd: (-1) smoothROCtime-package.Rd:14: Lost braces; missing escapes or markup?     14 | \item \code{\link{plot.sROCt}}: {Plots of Cumulative/Dynamic and Incident/Dyanmic ROC curve estimations.}        | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup?     17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.}        | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup?     17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.}        | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup?     17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.}        | ^ checkRd: (-1) stRoc.Rd:17: Lost braces; missing escapes or markup?     17 | \item{bw}{procedure for computing the bandwidth matrix. Most of the methods included at the \code{kde} function can be used: Hpi, Hpi.diag, Hlscv, Hlscv.diag, Hbcv, Hbcv.diag, Hscv, Hscv.diag, Hucv and Hucv.diag. Other considered methods are naive.pdf (diag(N^{-1/5}, N^{-1/5})^2) and naive.cdf (diag(N^{-1/3}, N^{-1/3})^2), where N is the sample size.}        | ^ checkRd: (-1) stRoc.Rd:69: Lost braces; missing escapes or markup?     69 | \item {\code{time}} - {single point of time at which the estimation each the C/D ROC curve has been computed.}        | ^ checkRd: (-1) stRoc.Rd:70: Lost braces; missing escapes or markup?     70 | \item {\code{obvt}} - {observed times for the individuals in the sample.}        | ^ checkRd: (-1) stRoc.Rd:71: Lost braces; missing escapes or markup?     71 | \item {\code{p}} - {estimations of the probabilities computed and allocated to each subject.}        | ^
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... NOTE Found the following Rd file(s) with Rd \link{} targets missing package anchors:   funcen.Rd: kde   smoothROCtime-package.Rd: ks   stRoc.Rd: kde Please provide package anchors for all Rd \link{} targets not in the package itself and the base packages.
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking LazyData ... INFO   'LazyData' is specified without a 'data' directory
• checking examples ... [15s/21s] OK Examples with CPU (user + system) or elapsed time > 5s         user system elapsed stRoc 6.219 0.108 8.516 funcen 5.940 0.229 8.785
• checking PDF version of manual ... [4s/6s] OK
• checking HTML version of manual ... [1s/1s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 2 NOTEs