• using R Under development (unstable) (2025-12-18 r89199)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 21.1.7 (1)     Debian flang version 21.1.7 (1)
• running under: Debian GNU/Linux forky/sid
• using session charset: UTF-8
• checking for file ‘sf/DESCRIPTION’ ... OK
• this is package ‘sf’ version ‘1.0-23’
• package encoding: UTF-8
• checking CRAN incoming feasibility ... [2s/3s] OK
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘sf’ can be installed ... WARNING Found the following significant warnings:   Warning: src/Makevars: Unknown C++ standard ‘CXX’ was ignored See the install log for details.
• used C++ compiler: ‘Debian clang version 21.1.7 (1)’
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/1s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/2s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/2s] OK
• checking whether startup messages can be suppressed ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [37s/47s] OK
• checking Rd files ... [1s/2s] OK
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking line endings in shell scripts ... OK
• checking line endings in C/C++/Fortran sources/headers ... OK
• checking line endings in Makefiles ... OK
• checking compilation flags in Makevars ... OK
• checking for GNU extensions in Makefiles ... OK
• checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
• checking use of PKG_*FLAGS in Makefiles ... OK
• checking use of SHLIB_OPENMP_*FLAGS in Makefiles ... OK
• checking pragmas in C/C++ headers and code ... OK
• checking compilation flags used ... OK
• checking compiled code ... NOTE File ‘sf/libs/sf.so’:   Found non-API call to R: ‘ATTRIB’ Compiled code should not call non-API entry points in R. See ‘Writing portable packages’ in the ‘Writing R Extensions’ manual, and section ‘Moving into C API compliance’ for issues with the use of non-API entry points.
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [27s/43s] OK Examples with CPU (user + system) or elapsed time > 5s                 user system elapsed interpolate_aw 5.530 0.033 8.962 st_as_sf 4.834 0.291 9.237
• checking for unstated dependencies in ‘demo’ ... OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [128s/170s] OK   Running ‘aggregate.R’ [1s/2s]   Comparing ‘aggregate.Rout’ to ‘aggregate.Rout.save’ ... OK   Running ‘cast.R’ [2s/3s]   Comparing ‘cast.Rout’ to ‘cast.Rout.save’ ... OK   Running ‘crs.R’ [1s/2s]   Comparing ‘crs.Rout’ to ‘crs.Rout.save’ ... OK   Running ‘dist.R’ [2s/2s]   Comparing ‘dist.Rout’ to ‘dist.Rout.save’ ... OK   Running ‘dplyr.R’ [4s/6s]   Comparing ‘dplyr.Rout’ to ‘dplyr.Rout.save’ ... OK   Running ‘empty.R’ [1s/2s]   Comparing ‘empty.Rout’ to ‘empty.Rout.save’ ... OK   Running ‘full.R’ [2s/3s]   Comparing ‘full.Rout’ to ‘full.Rout.save’ ... OK   Running ‘gdal_geom.R’ [2s/3s]   Comparing ‘gdal_geom.Rout’ to ‘gdal_geom.Rout.save’ ... OK   Running ‘geos.R’ [30s/40s]   Comparing ‘geos.Rout’ to ‘geos.Rout.save’ ... OK   Running ‘graticule.R’ [4s/6s]   Comparing ‘graticule.Rout’ to ‘graticule.Rout.save’ ... OK   Running ‘grid.R’ [2s/2s]   Comparing ‘grid.Rout’ to ‘grid.Rout.save’ ... OK   Running ‘maps.R’ [3s/4s]   Comparing ‘maps.Rout’ to ‘maps.Rout.save’ ... OK   Running ‘plot.R’ [9s/11s]   Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK   Running ‘read.R’ [3s/5s]   Comparing ‘read.Rout’ to ‘read.Rout.save’ ... OK   Running ‘roundtrip.R’ [2s/3s]   Comparing ‘roundtrip.Rout’ to ‘roundtrip.Rout.save’ ... OK   Running ‘s2.R’ [3s/3s]   Comparing ‘s2.Rout’ to ‘s2.Rout.save’ ... OK   Running ‘sample.R’ [1s/2s]   Comparing ‘sample.Rout’ to ‘sample.Rout.save’ ... OK   Running ‘sfc.R’ [17s/21s]   Comparing ‘sfc.Rout’ to ‘sfc.Rout.save’ ... OK   Running ‘sfg.R’ [1s/1s]   Comparing ‘sfg.Rout’ to ‘sfg.Rout.save’ ... OK   Running ‘spatstat.R’ [5s/7s]   Comparing ‘spatstat.Rout’ to ‘spatstat.Rout.save’ ... OK   Running ‘stars.R’ [4s/6s]   Comparing ‘stars.Rout’ to ‘stars.Rout.save’ ... OK   Running ‘testthat.R’ [24s/32s]   Running ‘units.R’ [1s/2s]   Comparing ‘units.Rout’ to ‘units.Rout.save’ ... OK   Running ‘wkb.R’ [1s/2s]   Comparing ‘wkb.Rout’ to ‘wkb.Rout.save’ ... OK
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [93s/130s] ERROR Error(s) in re-building vignettes:   ... --- re-building ‘sf1.Rmd’ using rmarkdown --- finished re-building ‘sf1.Rmd’ --- re-building ‘sf2.Rmd’ using rmarkdown --- finished re-building ‘sf2.Rmd’ --- re-building ‘sf3.Rmd’ using rmarkdown --- finished re-building ‘sf3.Rmd’ --- re-building ‘sf4.Rmd’ using rmarkdown --- finished re-building ‘sf4.Rmd’ --- re-building ‘sf5.Rmd’ using rmarkdown Quitting from sf5.Rmd:204-207 [unnamed-chunk-22] ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ <error/rlang_error> Error in `[.data.table`: ! attempt access index 4/4 in VECTOR_ELT --- Backtrace:      ▆   1. └─tools:::.buildOneVignette(...)   2. ├─base::tryCatch(...)   3. │ └─base (local) tryCatchList(expr, classes, parentenv, handlers)   4. │ └─base (local) tryCatchOne(expr, names, parentenv, handlers[[1L]])   5. │ └─base (local) doTryCatch(return(expr), name, parentenv, handler)   6. └─engine$weave(file, quiet = quiet, encoding = enc)   7. └─knitr:::vweave_rmarkdown(...)   8. └─rmarkdown::render(...)   9. └─knitr::knit(knit_input, knit_output, envir = envir, quiet = quiet)  10. └─knitr:::process_file(text, output)  11. ├─xfun:::handle_error(...)  12. ├─base::withCallingHandlers(...)  13. └─knitr:::process_group(group)  14. └─knitr:::call_block(x)  15. └─knitr:::block_exec(params)  16. └─knitr:::eng_r(options)  17. ├─knitr:::in_input_dir(...)  18. │ └─knitr:::in_dir(input_dir(), expr)  19. └─knitr (local) evaluate(...)  20. └─evaluate::evaluate(...)  21. ├─base::withRestarts(...)  22. │ └─base (local) withRestartList(expr, restarts)  23. │ ├─base (local) withOneRestart(withRestartList(expr, restarts[-nr]), restarts[[nr]])  24. │ │ └─base (local) doWithOneRestart(return(expr), restart)  25. │ └─base (local) withRestartList(expr, restarts[-nr])  26. │ └─base (local) withOneRestart(expr, restarts[[1L]])  27. │ └─base (local) doWithOneRestart(return(expr), restart)  28. ├─evaluate:::with_handlers(...)  29. │ ├─base::eval(call)  30. │ │ └─base::eval(call)  31. │ └─base::withCallingHandlers(...)  32. └─watcher$print_value(ev$value, ev$visible, envir)  33. ├─base::withVisible(handle_value(handler, value, visible, envir))  34. └─evaluate:::handle_value(handler, value, visible, envir)  35. └─handler$value(value, visible)  36. └─knitr (local) fun(x, options = options)  37. ├─base::withVisible(knit_print(x, ...))  38. ├─knitr::knit_print(x, ...)  39. └─tmap:::knit_print.tmap(x, ...)  40. └─tmap:::print.tmap(x, knit = TRUE, options = options, ...)  41. └─tmap:::step4_plot(...)  42. ├─...[]  43. └─data.table:::`[.data.table`(...) ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ Error: processing vignette 'sf5.Rmd' failed with diagnostics: attempt access index 4/4 in VECTOR_ELT --- failed re-building ‘sf5.Rmd’ --- re-building ‘sf6.Rmd’ using rmarkdown --- finished re-building ‘sf6.Rmd’ --- re-building ‘sf7.Rmd’ using rmarkdown Linking to liblwgeom 3.0.0beta1 r16016, GEOS 3.14.1, PROJ 9.7.1 Attaching package: 'lwgeom' The following objects are masked from 'package:sf':     st_minimum_bounding_circle, st_perimeter --- finished re-building ‘sf7.Rmd’ SUMMARY: processing the following file failed:   ‘sf5.Rmd’ Error: Vignette re-building failed. Execution halted
• checking PDF version of manual ... [10s/12s] OK
• checking HTML version of manual ... [10s/16s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 ERROR, 1 WARNING, 1 NOTE