* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘rxylib’ ...
** package ‘rxylib’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.5 (1)’
using C++17
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxuB4vV/R.INSTALL2a5f7c2495c769/rxylib/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c read_data.cpp -o read_data.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c get_supportedFormats.cpp -o get_supportedFormats.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c get_version.cpp -o get_version.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c get_meta_DataSet.cpp -o get_meta_DataSet.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c get_block_names.cpp -o get_block_names.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/bruker_raw.cpp -o xylib/bruker_raw.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/bruker_spc.cpp -o xylib/bruker_spc.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/cache.cpp -o xylib/cache.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/canberra_cnf.cpp -o xylib/canberra_cnf.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/canberra_mca.cpp -o xylib/canberra_mca.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/chiplot.cpp -o xylib/chiplot.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/cpi.cpp -o xylib/cpi.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/csv.cpp -o xylib/csv.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/dbws.cpp -o xylib/dbws.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/pdcif.cpp -o xylib/pdcif.o
In file included from xylib/pdcif.cpp:14:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/include/classic_core.hpp:11:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core.hpp:41:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/rule.hpp:31:
In file included from /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/scoped_ptr.hpp:13:
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/smart_ptr/scoped_ptr.hpp:75:31: warning: 'auto_ptr<boost::spirit::classic::impl::abstract_parser<boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>, boost::spirit::classic::nil_t>>' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations]
75 | explicit scoped_ptr( std::auto_ptr<T> p ) noexcept : px( p.release() )
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/rule.hpp:168:39: note: in instantiation of template class 'boost::scoped_ptr<boost::spirit::classic::impl::abstract_parser<boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>, boost::spirit::classic::nil_t>>' requested here
168 | scoped_ptr<abstract_parser_t> ptr;
| ^
xylib/pdcif.cpp:264:24: note: in instantiation of template class 'boost::spirit::classic::rule<boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>>' requested here
264 | rule<ScannerT> CIF, DataBlock, DataBlockHeading, SaveFrame,
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/impl/grammar.ipp:179:13: note: in instantiation of template class 'xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>::definition<boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>>' requested here
179 | delete definitions[id];
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/impl/grammar.ipp:142:9: note: in instantiation of member function 'boost::spirit::classic::impl::grammar_helper<boost::spirit::classic::grammar<xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>>, xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>, boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>>::undefine' requested here
142 | grammar_helper(helper_weak_ptr_t& p)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/impl/grammar.ipp:232:17: note: in instantiation of member function 'boost::spirit::classic::impl::grammar_helper<boost::spirit::classic::grammar<xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>>, xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>, boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>>::grammar_helper' requested here
232 | new helper_t(helper);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/impl/grammar.ipp:272:29: note: in instantiation of function template specialization 'boost::spirit::classic::impl::get_definition<xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>, boost::spirit::classic::parser_context<>, boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>>' requested here
272 | definition_t &def = get_definition<DerivedT, ContextT, ScannerT>(self);
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/grammar.hpp:57:20: note: in instantiation of function template specialization 'boost::spirit::classic::impl::grammar_parser_parse<0, xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>, boost::spirit::classic::parser_context<>, boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>>' requested here
57 | { return impl::grammar_parser_parse<0>(this, scan); }
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/grammar.hpp:65:9: note: in instantiation of function template specialization 'boost::spirit::classic::grammar<xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>>::parse_main<boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>>' requested here
65 | BOOST_SPIRIT_CONTEXT_PARSE(scan, *this, scanner_t, context_t, result_t)
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/non_terminal/parser_context.hpp:142:28: note: expanded from macro 'BOOST_SPIRIT_CONTEXT_PARSE'
142 | result_t hit = parse_main(scan); \
| ^
/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include/boost/spirit/home/classic/core/impl/parser.ipp:30:40: note: in instantiation of function template specialization 'boost::spirit::classic::grammar<xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>>::parse<boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>>' requested here
30 | match<nil_t> hit = p.derived().parse(scan);
| ^
xylib/pdcif.cpp:534:9: note: in instantiation of function template specialization 'boost::spirit::classic::parse<__gnu_cxx::__normal_iterator<char *, std::vector<char>>, xylib::(anonymous namespace)::CifGrammar<xylib::(anonymous namespace)::DatasetActions>>' requested here
534 | parse(vec.begin(), vec.end(), p);
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/c++/14/backward/auto_ptr.h:291:7: note: 'auto_ptr<boost::spirit::classic::impl::abstract_parser<boost::spirit::classic::scanner<__gnu_cxx::__normal_iterator<char *, std::vector<char>>>, boost::spirit::classic::nil_t>>' has been explicitly marked deprecated here
291 | } _GLIBCXX11_DEPRECATED_SUGGEST("std::unique_ptr");
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:108:45: note: expanded from macro '_GLIBCXX11_DEPRECATED_SUGGEST'
108 | # define _GLIBCXX11_DEPRECATED_SUGGEST(ALT) _GLIBCXX_DEPRECATED_SUGGEST(ALT)
| ^
/usr/lib/gcc/x86_64-linux-gnu/14/../../../../include/x86_64-linux-gnu/c++/14/bits/c++config.h:100:19: note: expanded from macro '_GLIBCXX_DEPRECATED_SUGGEST'
100 | __attribute__ ((__deprecated__ ("use '" ALT "' instead")))
| ^
1 warning generated.
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/philips_raw.cpp -o xylib/philips_raw.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/philips_udf.cpp -o xylib/philips_udf.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/riet7.cpp -o xylib/riet7.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/rigaku_dat.cpp -o xylib/rigaku_dat.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/specsxy.cpp -o xylib/specsxy.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/spectra.cpp -o xylib/spectra.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/text.cpp -o xylib/text.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/util.cpp -o xylib/util.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/uxd.cpp -o xylib/uxd.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/vamas.cpp -o xylib/vamas.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/winspec_spe.cpp -o xylib/winspec_spe.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/xfit_xdd.cpp -o xylib/xfit_xdd.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/xrdml.cpp -o xylib/xrdml.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/xsyg.cpp -o xylib/xsyg.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/BH/include' -I/usr/local/include -D_FORTIFY_SOURCE=3 -I../inst/include/ -I../inst/include/xylib/ -DDISABLE_STDERR_WARNINGS -fpic -g -O3 -Wall -pedantic -DR_NO_REMAP -c xylib/xylib.cpp -o xylib/xylib.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o rxylib.so read_data.o get_supportedFormats.o get_version.o get_meta_DataSet.o get_block_names.o RcppExports.o ./xylib/bruker_raw.o ./xylib/bruker_spc.o ./xylib/cache.o ./xylib/canberra_cnf.o ./xylib/canberra_mca.o ./xylib/chiplot.o ./xylib/cpi.o ./xylib/csv.o ./xylib/dbws.o ./xylib/pdcif.o ./xylib/philips_raw.o ./xylib/philips_udf.o ./xylib/riet7.o ./xylib/rigaku_dat.o ./xylib/specsxy.o ./xylib/spectra.o ./xylib/text.o ./xylib/util.o ./xylib/uxd.o ./xylib/vamas.o ./xylib/winspec_spe.o ./xylib/xfit_xdd.o ./xylib/xrdml.o ./xylib/xsyg.o ./xylib/xylib.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxuB4vV/R.INSTALL2a5f7c2495c769/rxylib/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/RtmpxuB4vV/R.INSTALL2a5f7c2495c769/rxylib/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/RtmpxuB4vV/R.INSTALL2a5f7c2495c769/rxylib/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-rxylib/00new/rxylib/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (rxylib)