• using R Under development (unstable) (2024-12-21 r87453)
• using platform: x86_64-pc-linux-gnu
• R was compiled by     Debian clang version 19.1.5 (1)     Debian flang-new version 19.1.5 (1)
• running under: Debian GNU/Linux trixie/sid
• using session charset: UTF-8
• checking for file ‘rotl/DESCRIPTION’ ... OK
• this is package ‘rotl’ version ‘3.1.0’
• package encoding: UTF-8
• checking package namespace information ... OK
• checking package dependencies ... OK
• checking if this is a source package ... OK
• checking if there is a namespace ... OK
• checking for executable files ... OK
• checking for hidden files and directories ... OK
• checking for portable file names ... OK
• checking for sufficient/correct file permissions ... OK
• checking serialization versions ... OK
• checking whether package ‘rotl’ can be installed ... OK See the install log for details.
• checking package directory ... OK
• checking for future file timestamps ... OK
• checking ‘build’ directory ... OK
• checking DESCRIPTION meta-information ... OK
• checking top-level files ... OK
• checking for left-over files ... OK
• checking index information ... OK
• checking package subdirectories ... OK
• checking code files for non-ASCII characters ... OK
• checking R files for syntax errors ... OK
• checking whether the package can be loaded ... [1s/2s] OK
• checking whether the package can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the package can be unloaded cleanly ... [1s/1s] OK
• checking whether the namespace can be loaded with stated dependencies ... [1s/1s] OK
• checking whether the namespace can be unloaded cleanly ... [1s/1s] OK
• checking loading without being on the library search path ... [1s/1s] OK
• checking use of S3 registration ... OK
• checking dependencies in R code ... OK
• checking S3 generic/method consistency ... OK
• checking replacement functions ... OK
• checking foreign function calls ... OK
• checking R code for possible problems ... [12s/15s] OK
• checking Rd files ... [1s/1s] NOTE checkRd: (-1) get_study_meta.Rd:54-55: Lost braces in \itemize; meant \describe ? checkRd: (-1) get_study_meta.Rd:57-60: Lost braces in \itemize; meant \describe ? checkRd: (-1) get_study_meta.Rd:62-68: Lost braces in \itemize; meant \describe ? checkRd: (-1) get_study_meta.Rd:66: Lost braces; missing escapes or markup?     66 | \item {get_study_year} { The year of publication of the study. }        | ^ checkRd: (-1) get_study_meta.Rd:66: Lost braces; missing escapes or markup?     66 | \item {get_study_year} { The year of publication of the study. }        | ^ checkRd: (-1) rotl.Rd:27-31: Lost braces in \itemize; meant \describe ? checkRd: (-1) rotl.Rd:33-36: Lost braces in \itemize; meant \describe ? checkRd: (-1) taxonomy_about.Rd:17-18: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_about.Rd:20: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_about.Rd:22: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_about.Rd:24-25: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_about.Rd:27: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_mrca.Rd:43-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_mrca.Rd:47-48: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_mrca.Rd:50-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_mrca.Rd:53-54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_subtree.Rd:35-38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_subtree.Rd:40-42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_subtree.Rd:44-45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) taxonomy_subtree.Rd:47-49: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:38: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:40-41: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:43-44: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:46-47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:49-50: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:52: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:58: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:60: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:62: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:64-65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:69-71: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:75-80: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:82-85: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:88-89: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:91: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:93-94: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_about.Rd:97: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:42: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:45: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:47: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:49-51: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:54: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:56: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:58-59: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:63-65: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:73-75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:77-79: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:81-84: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:86-88: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:91-93: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:96: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:98: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:100-101: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:103: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:105-107: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:110-112: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:115-116: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:118: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_mrca.Rd:120-121: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:55: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:57: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:59-61: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:63-64: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:66-67: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:70: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:72: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:74-75: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:77: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:79-81: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:88-90: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:92-96: Lost braces in \itemize; \value handles \item{}{} directly checkRd: (-1) tol_node_info.Rd:98-100: Lost braces in \itemize; \value handles \item{}{} directly
• checking Rd metadata ... OK
• checking Rd line widths ... OK
• checking Rd cross-references ... OK
• checking for missing documentation entries ... OK
• checking for code/documentation mismatches ... OK
• checking Rd \usage sections ... OK
• checking Rd contents ... OK
• checking for unstated dependencies in examples ... OK
• checking installed files from ‘inst/doc’ ... OK
• checking files in ‘vignettes’ ... OK
• checking examples ... [1s/2s] OK
• checking for unstated dependencies in ‘tests’ ... OK
• checking tests ... [9s/10s] OK   Running ‘test-all.R’ [8s/10s]
• checking for unstated dependencies in vignettes ... OK
• checking package vignettes ... OK
• checking re-building of vignette outputs ... [5s/6s] OK
• checking PDF version of manual ... [5s/7s] OK
• checking HTML version of manual ... [1s/2s] OK
• checking for non-standard things in the check directory ... OK
• DONE

Status: 1 NOTE