* installing to library ‘/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages’
* installing *source* package ‘pureseqtmr’ ...
** this is package ‘pureseqtmr’ version ‘1.4’
** package ‘pureseqtmr’ successfully unpacked and MD5 sums checked
** using staged installation
** libs
using C++ compiler: ‘Debian clang version 19.1.6 (1+b1)’
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0VATuo/R.INSTALL38d81d5e40cc75/pureseqtmr/src'
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c RcppExports.cpp -o RcppExports.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c calc_distance_to_tmh_center_from_topology_str_cpp_stl.cpp -o calc_distance_to_tmh_center_from_topology_str_cpp_stl.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c load_fasta_file_as_tibble_cpp_raw.cpp -o load_fasta_file_as_tibble_cpp_raw.o
clang++-19 -std=gnu++17 -I"/home/hornik/tmp/R.check/r-devel-clang/Work/build/include" -DNDEBUG  -I'/home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/Rcpp/include' -I/usr/local/include -D_FORTIFY_SOURCE=3   -fpic  -g -O3 -Wall -pedantic -Wno-missing-template-arg-list-after-template-kw -DR_NO_REMAP -c load_fasta_file_as_tibble_cpp_stl.cpp -o load_fasta_file_as_tibble_cpp_stl.o
clang++-19 -std=gnu++17 -shared -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -Wl,-O1 -o pureseqtmr.so RcppExports.o calc_distance_to_tmh_center_from_topology_str_cpp_stl.o load_fasta_file_as_tibble_cpp_raw.o load_fasta_file_as_tibble_cpp_stl.o -L/home/hornik/tmp/R.check/r-devel-clang/Work/build/lib -lR
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0VATuo/R.INSTALL38d81d5e40cc75/pureseqtmr/src'
make[1]: Entering directory '/home/hornik/tmp/scratch/Rtmp0VATuo/R.INSTALL38d81d5e40cc75/pureseqtmr/src'
make[1]: Leaving directory '/home/hornik/tmp/scratch/Rtmp0VATuo/R.INSTALL38d81d5e40cc75/pureseqtmr/src'
installing to /home/hornik/tmp/R.check/r-devel-clang/Work/build/Packages/00LOCK-pureseqtmr/00new/pureseqtmr/libs
** R
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
*** copying figures
** building package indices
** installing vignettes
** testing if installed package can be loaded from temporary location
** checking absolute paths in shared objects and dynamic libraries
** testing if installed package can be loaded from final location
** testing if installed package keeps a record of temporary installation path
* DONE (pureseqtmr)