- using R Under development (unstable) (2025-02-23 r87804)
- using platform: x86_64-pc-linux-gnu
- R was compiled by
Debian clang version 19.1.7 (1+b1)
Debian flang-new version 19.1.7 (1+b1)
- running under: Debian GNU/Linux trixie/sid
- using session charset: UTF-8
- checking for file ‘poems/DESCRIPTION’ ... OK
- checking extension type ... Package
- this is package ‘poems’ version ‘1.3.1’
- package encoding: UTF-8
- checking package namespace information ... OK
- checking package dependencies ... OK
- checking if this is a source package ... OK
- checking if there is a namespace ... OK
- checking for executable files ... OK
- checking for hidden files and directories ... OK
- checking for portable file names ... OK
- checking for sufficient/correct file permissions ... OK
- checking whether package ‘poems’ can be installed ... OK
See the install log for details.
- checking package directory ... OK
- checking for future file timestamps ... OK
- checking ‘build’ directory ... OK
- checking DESCRIPTION meta-information ... OK
- checking top-level files ... OK
- checking for left-over files ... OK
- checking index information ... OK
- checking package subdirectories ... OK
- checking code files for non-ASCII characters ... OK
- checking R files for syntax errors ... OK
- checking whether the package can be loaded ... [13s/16s] OK
- checking whether the package can be loaded with stated dependencies ... [12s/14s] OK
- checking whether the package can be unloaded cleanly ... [12s/14s] OK
- checking whether the namespace can be loaded with stated dependencies ... [12s/13s] OK
- checking whether the namespace can be unloaded cleanly ... [12s/14s] OK
- checking loading without being on the library search path ... [13s/19s] OK
- checking use of S3 registration ... OK
- checking dependencies in R code ... OK
- checking S3 generic/method consistency ... OK
- checking replacement functions ... OK
- checking foreign function calls ... OK
- checking R code for possible problems ... [61s/79s] OK
- checking Rd files ... [1s/2s] OK
- checking Rd metadata ... OK
- checking Rd line widths ... OK
- checking Rd cross-references ... OK
- checking for missing documentation entries ... OK
- checking for code/documentation mismatches ... OK
- checking Rd \usage sections ... OK
- checking Rd contents ... OK
- checking for unstated dependencies in examples ... OK
- checking contents of ‘data’ directory ... OK
- checking data for non-ASCII characters ... [9s/13s] OK
- checking data for ASCII and uncompressed saves ... OK
- checking sizes of PDF files under ‘inst/doc’ ... OK
- checking installed files from ‘inst/doc’ ... OK
- checking files in ‘vignettes’ ... OK
- checking examples ... [21s/28s] OK
- checking for unstated dependencies in ‘tests’ ... OK
- checking tests ... [65s/81s] ERROR
Running ‘testthat.R’ [64s/80s]
Running the tests in ‘tests/testthat.R’ failed.
Complete output:
> library(testthat)
> library(poems)
>
> test_check("poems")
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1093 ]
══ Failed tests ════════════════════════════════════════════════════════════════
── Error ('test_results_manager.R:385:5'): calculate summary weighted averages ──
Error in `FUN(newX[, i], ...)`: NA in coercion to Rboolean
Backtrace:
▆
1. ├─testthat::expect_silent(results_manager$calculate_summary_weighted_averages(na_replacements = list(abundance = na_function))) at test_results_manager.R:388:3
2. │ └─testthat:::quasi_capture(enquo(object), NULL, evaluate_promise)
3. │ ├─testthat (local) .capture(...)
4. │ │ ├─withr::with_output_sink(...)
5. │ │ │ └─base::force(code)
6. │ │ ├─base::withCallingHandlers(...)
7. │ │ └─base::withVisible(code)
8. │ └─rlang::eval_bare(quo_get_expr(.quo), quo_get_env(.quo))
9. └─results_manager$calculate_summary_weighted_averages(na_replacements = list(abundance = na_function))
10. └─na_replacements[[param]](summary_matrix_list[[param]])
11. └─base::apply(a, 2, min, na.rm = NA) at test_results_manager.R:385:5
[ FAIL 1 | WARN 0 | SKIP 0 | PASS 1093 ]
Error: Test failures
Execution halted
- checking for unstated dependencies in vignettes ... OK
- checking package vignettes ... OK
- checking re-building of vignette outputs ... [33s/38s] OK
- checking PDF version of manual ... [9s/12s] OK
- checking HTML version of manual ... [4s/7s] OK
- checking for non-standard things in the check directory ... OK
- DONE
Status: 1 ERROR